PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004507179.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 173aa MW: 19611.9 Da PI: 4.7185

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004507179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.8e-05	18	40	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H XP_004507179.1 18 YECNFCKRGFSNAQALGGHMNIH 40 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.23E-7	16	45	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.6E-5	16	44	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.614	18	45	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	20	40	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MESDECDQDA KKLNLRSYEC NFCKRGFSNA QALGGHMNIH RKDKAKLKQQ FSNQTQPSNL 60 EANFVVEEKL VKLPNLNSNV SQQDHQDAPC KDDEILVIHM RQQQLLLFAE SPTTSEIQKP 120 LQGDQIEREI VTKEEGLLLS CDEDSSSELD LELRLGPEPH DSSAPPTGTR KFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004507179.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004507179.1	1e-125	transcriptional regulator TAC1-like
TrEMBL	A0A1S2YMX8	1e-124	A0A1S2YMX8_CICAR; transcriptional regulator TAC1-like
STRING	XP_004507179.1	1e-125	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3335	31	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	5e-16	C2H2 family protein