PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507244.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 241aa    MW: 28153.5 Da    PI: 6.5839
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G ++W+  +++ g+ R++k+c++rw +yl
   XP_004507244.1 14 KGAWSEEEDHKLIAYIERHGHPNWRQLPKYAGLSRCGKSCRLRWMNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.83.8e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+ E++ + +++k++G++ W+ Ia+ +  gRt++++k++w+++l
   XP_004507244.1  67 RGKYTPMEEQMIMELHKKHGNK-WSMIAENLV-GRTDNEIKNYWHSHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-22863IPR009057Homeodomain-like
PROSITE profilePS5129418.163961IPR017930Myb domain
SuperFamilySSF466895.99E-3011108IPR009057Homeodomain-like
SMARTSM007175.6E-141363IPR001005SANT/Myb domain
PfamPF002492.1E-161461IPR001005SANT/Myb domain
CDDcd001678.16E-101661No hitNo description
PROSITE profilePS5129424.92662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2564114IPR009057Homeodomain-like
SMARTSM007172.7E-1566114IPR001005SANT/Myb domain
PfamPF002492.1E-1467112IPR001005SANT/Myb domain
CDDcd001673.74E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVRAPYFDEN GIKKGAWSEE EDHKLIAYIE RHGHPNWRQL PKYAGLSRCG KSCRLRWMNY  60
LRPNLKRGKY TPMEEQMIME LHKKHGNKWS MIAENLVGRT DNEIKNYWHS HLKRFSKHNE  120
TNFGEETEKT KKICDSVSGD SHHILESSLS MSSEISYTTT QGNSPSISSE FNHVVESNVN  180
LYRKEDSVAS WETLDGFSNN FWTEPFVLES ALSQDCFPIS FYCGVEAEDP FFYETLKLKF  240
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141147106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507244.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507244.10.0transcription factor MYB13-like
TrEMBLA0A1S2YMW30.0A0A1S2YMW3_CICAR; transcription factor MYB13-like
STRINGXP_004507244.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.13e-54myb domain protein 13