PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507367.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 146aa    MW: 17149.9 Da    PI: 10.4595
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23e-13191021199
                     HHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  11 lksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++r+ +p k +  +   g    ++  + l  + g++W+v +   k +++ ++++GWk+F k+n +   +f++F++ + ++f   v++f k
  XP_004507367.1  19 QNTNRMKVPQKIV-MCldeG--LWRKAFIFLIGPCGEKWKVSI--LKEGNELYMQNGWKKFMKDNSVVHDEFLLFTYGE-KRF--QVQIFGK 102
                     4566788888887.555533..3355679999***********..*******************************844.777..9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-175103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-176104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.1949103IPR003340B3 DNA binding domain
SMARTSM010197.7E-812103IPR003340B3 DNA binding domain
PfamPF023621.8E-1018102IPR003340B3 DNA binding domain
CDDcd100171.09E-844100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEHDQQDKPS SFFTIIKDQN TNRMKVPQKI VMCLDEGLWR KAFIFLIGPC GEKWKVSILK  60
EGNELYMQNG WKKFMKDNSV VHDEFLLFTY GEKRFQVQIF GKNGIERPCV KKEQVQEEQK  120
VAPIVAKKKR GRPRKIHIPA XRPGPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507367.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507367.11e-104B3 domain-containing protein Os11g0197600-like
TrEMBLA0A1S3EBK11e-102A0A1S3EBK1_CICAR; B3 domain-containing protein Os11g0197600-like
STRINGXP_004507367.11e-103(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14239914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-10B3 family protein