PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004507429.2

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 261aa MW: 29648.4 Da PI: 6.1127

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004507429.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.2	7.6e-30	98	185	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+e+GF +r+sk ++s+r+g+ + r fvC+keg+r ++k++ k r+raetr+gC+a+++v+k+++gkw++tk+++eH H+l+p XP_004507429.2 98 FYNAYATEAGFIIRVSKLSRSRRDGTAIGRAFVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMIMVRKMNSGKWVITKFVKEHAHPLNP 185 ****************************************9988..9************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-27	98	185	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MVDEAPSNKA TASELPFAVI VIISIVEFGI DDSFNGDTVK NVVMAEAEPT YQQDHDNTTQ 60 DSSRLLTIPS ADPTVPDTAV DEPYVGQEFE SEAAAHAFYN AYATEAGFII RVSKLSRSRR 120 DGTAIGRAFV CNKEGYRMPD KREKIVRQRA ETRVGCRAMI MVRKMNSGKW VITKFVKEHA 180 HPLNPGSGRR DCFYEQCPNE HDKIRELSQQ LAIEKKRSVT YKRQLELIFD YIEEHNVSLS 240 KKIQHIVDSV KEIEPKEEDN H

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004507429.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027926454.1	1e-131	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A392MNA0	1e-142	A0A392MNA0_9FABA; Protein FAR1-RELATED SEQUENCE 6-like (Fragment)
STRING	XP_004507429.1	1e-161	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-89	FAR1 family protein