PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507548.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 236aa    MW: 27061.9 Da    PI: 8.4033
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.14.5e-2665153290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fY+eYA++vGF +r+ + ++s+r+g+i  r++ C+keg+  + + k    r++r++tr gCka++++k +k+gkw++tk++++HnH+l+
  XP_004507548.1  65 FYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRSSTRDGCKAMIHIKYDKSGKWVITKFVKDHNHPLV 153
                     9**************************************99999998****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-2365153IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MLSRLVDGNG EMEVSGDAGL VEPNDGCRLL ESYSGRELGT SHHDHAIQEP YEGMEFVSED  60
AAKIFYDEYA RHVGFVMRVM SCRRSERDGR ILARRLGCNK EGHCVSIRGK FGPVRKPRSS  120
TRDGCKAMIH IKYDKSGKWV ITKFVKDHNH PLVVSPREAR QTVDEKDKKI QELTTELRIK  180
KRLCATYQEQ LTSFMKTVED HSDKLSARIR HILGNLKEFE SIEELLLQRA CARCDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1444250.0BT144425.1 Medicago truncatula clone JCVI-FLMt-6J23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507548.11e-176protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_004507549.11e-176protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_004507550.11e-176protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1S2YNM11e-175A0A1S2YNM1_CICAR; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_004507548.11e-175(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-102FAR1 family protein