PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507608.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 543aa    MW: 60705.4 Da    PI: 5.5628
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.15.5e-1301725431374
            GRAS   1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l+e+Ll cA+avs+gd + a+  + + l +++s  gdp+qRl ay++e+L+arl +s+s +ykal++++ +   s+e +++++++++++P++kf+
  XP_004507608.1 172 LKEVLLLCAQAVSDGDISTARGWMDNvLVKMVSVGGDPIQRLGAYLLEGLRARLESSGSLIYKALKCEQPT---SKELMSYMHVLYQICPYFKFA 263
                     5789*******************9872567799999**********************************9...999999*************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +l aN  I ea+++e+r+HiiDf+i qG+QW  L+qaLa+Rp+gpp +RiTgv++++s+  +   l+ +gerL++fA+++gvpfefn  +a +  
  XP_004507608.1 264 YLSANAVIAEAMANESRIHIIDFQIAQGTQWHLLIQALANRPGGPPFIRITGVDDSQSFhaRGGGLQIVGERLSEFARSCGVPFEFNY-AAMSGC 357
                     *******************************************************9999889999***********************.899999 PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +++ ++L+v+pgEalaVn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e+++yy+a+f+s+++   +++++r
  XP_004507608.1 358 EVQQQNLSVRPGEALAVNFPYILHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVETMDYYTAMFESIDVASLKDDKKR 452
                     ************************************************************************************999999***** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     i+ E+ +++r+ivn++aceg er+erhe ++kWr+r+++aGF++ +ls++++++a+ ll+ ++++ yr+e+++g+l+lgW++r++ ++SaW+
  XP_004507608.1 453 ISAEQNCVARDIVNMIACEGVERVERHEVFGKWRMRFSMAGFRQCALSSSVMDSAQNLLKDFNQN-YRLEHKDGALCLGWMKRAMATFSAWQ 543
                     ***************************************************************66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.179146524IPR005202Transcription factor GRAS
PfamPF035141.9E-127172543IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MQTSQQKSNS AAIHFYHRPA QDNCLQNNLC GDKHGSSSQG TPLSFETFDE QCFTLESYPE  60
ITGFIDCDSP SYASVSSNKS PFSPQDSQPC YSDHHQSSYN TNGSPTSGLS SVDDGNDLKH  120
KLRELEMSLL GPDDLDIVDS YGSYMEASFH GAPPSAKYNW DLIVENIPRL DLKEVLLLCA  180
QAVSDGDIST ARGWMDNVLV KMVSVGGDPI QRLGAYLLEG LRARLESSGS LIYKALKCEQ  240
PTSKELMSYM HVLYQICPYF KFAYLSANAV IAEAMANESR IHIIDFQIAQ GTQWHLLIQA  300
LANRPGGPPF IRITGVDDSQ SFHARGGGLQ IVGERLSEFA RSCGVPFEFN YAAMSGCEVQ  360
QQNLSVRPGE ALAVNFPYIL HHMPDESVSI ENHRDRLLRL VKSLSPKVVT LVEQESNTNT  420
SPFFHRFVET MDYYTAMFES IDVASLKDDK KRISAEQNCV ARDIVNMIAC EGVERVERHE  480
VFGKWRMRFS MAGFRQCALS SSVMDSAQNL LKDFNQNYRL EHKDGALCLG WMKRAMATFS  540
AWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-5920654336375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507608.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507608.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1S2YNR50.0A0A1S2YNR5_CICAR; scarecrow-like protein 13
STRINGXP_004507608.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13