PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004507626.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GRAS

Protein Properties

Length: 498aa MW: 55251.8 Da PI: 5.2954

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004507626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	412.5	3.8e-126	121	484	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 lv+ L++cA+ ++ g+l la +l++ ++ l a + + ++a yf AL++r++++ +++ ++s e+ ++ ++e++P+lkf XP_004507626.1 121 LVHMLMTCADSLQRGNLPLAGSLIEGMQGLlAHMNInCGIGKVAGYFIDALNRRIFGQ-NNII------SAS---LYENDVLYHHYYEACPYLKF 205 689***********************99555555469**************2.2222......222...4455567889****** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++++++l+e+g rLa++A++++v+f f+ ++a rled XP_004507626.1 206 AHFTANQAILEAFNGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPFLRLTGIGPPSPDDRDNLREIGLRLAELARSVNVRFAFRGVAAWRLED 300 ***********************************************************************************9888 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldes.vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +++++L+v+++Ea+aVn+++qlhrll ++ +++s +++vL ++sl+Pk+++vveqea+hn+ Flerf+eal+yys++fdslea e + XP_004507626.1 301 VKPWMLQVSSKEAVAVNSIMQLHRLLGSQsDPISSGIETVLGWIRSLNPKIMTVVEQEANHNKDGFLERFTEALHYYSTVFDSLEAC---PVEPD 392 ********************997651566779********************************************999...45677 PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + + +l+rei+nvv+ceg +r+erhe l kWrerl++aGF+p++l+++a kqa++ll ++ +gy vee++gsl+lgW++rpL+++SaW+ XP_004507626.1 393 KAMAEIYLQREICNVVCCEGPARIERHEPLVKWRERLGKAGFRPLHLGSNAFKQASMLLTLFSAEGYCVEENQGSLTLGWHSRPLIAASAWQ 484 7788889**********************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	1.5E-30	19	85	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	1.3E-18	19	91	No hit	No description
PROSITE profile	PS50985	61.608	95	464	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-123	121	484	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
METVSVSSPS EGTKTKDIDG LLAGVGYKVR SSELHQVAQN IERLENVIVN SSSDISQIAS 60 DTVHYDPSDI GNWVDNLLSE FDHTASLPYD FSELPDLAAA PPQDHQLKVV ATVEEDSAIK 120 LVHMLMTCAD SLQRGNLPLA GSLIEGMQGL LAHMNINCGI GKVAGYFIDA LNRRIFGQNN 180 IISASLYEND VLYHHYYEAC PYLKFAHFTA NQAILEAFNG HDCVHVIDFN LMHGLQWPAL 240 IQALALRPGG PPFLRLTGIG PPSPDDRDNL REIGLRLAEL ARSVNVRFAF RGVAAWRLED 300 VKPWMLQVSS KEAVAVNSIM QLHRLLGSQS DPISSGIETV LGWIRSLNPK IMTVVEQEAN 360 HNKDGFLERF TEALHYYSTV FDSLEACPVE PDKAMAEIYL QREICNVVCC EGPARIERHE 420 PLVKWRERLG KAGFRPLHLG SNAFKQASML LTLFSAEGYC VEENQGSLTL GWHSRPLIAA 480 SAWQAVSLPE TETLRFDH

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

METVSVSSPS EGTKTKDIDG LLAGVGYKVR SSELHQVAQN IERLENVIVN SSSDISQIAS  60
DTVHYDPSDI GNWVDNLLSE FDHTASLPYD FSELPDLAAA PPQDHQLKVV ATVEEDSAIK  120
LVHMLMTCAD SLQRGNLPLA GSLIEGMQGL LAHMNINCGI GKVAGYFIDA LNRRIFGQNN  180
IISASLYEND VLYHHYYEAC PYLKFAHFTA NQAILEAFNG HDCVHVIDFN LMHGLQWPAL  240
IQALALRPGG PPFLRLTGIG PPSPDDRDNL REIGLRLAEL ARSVNVRFAF RGVAAWRLED  300
VKPWMLQVSS KEAVAVNSIM QLHRLLGSQS DPISSGIETV LGWIRSLNPK IMTVVEQEAN  360
HNKDGFLERF TEALHYYSTV FDSLEACPVE PDKAMAEIYL QREICNVVCC EGPARIERHE  420
PLVKWRERLG KAGFRPLHLG SNAFKQASML LTLFSAEGYC VEENQGSLTL GWHSRPLIAA  480
SAWQAVSLPE TETLRFDH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-61	128	483	25	377	Protein SCARECROW
5b3h_D	3e-61	128	483	25	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004507626.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027192745.1	0.0	DELLA protein RHT-1-like
Swissprot	Q9LQT8	1e-161	GAI_ARATH; DELLA protein GAI
TrEMBL	A0A3Q7YGS4	0.0	A0A3Q7YGS4_CICAR; DELLA protein RHT-1-like
STRING	XP_004507626.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF803	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-163	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]