PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507769.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 355aa    MW: 40801.1 Da    PI: 6.607
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.8e-1548107155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  XP_004507769.1  48 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDNEETAAHAYDLAALKYWG 107
                     57*******************999955656446*************************98 PP
2AP251.13.3e-16150201155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_004507769.1 150 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 201
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.37E-1948117No hitNo description
PfamPF008474.7E-1248107IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1648117IPR016177DNA-binding domain
SMARTSM003801.5E-2549121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-1649116IPR001471AP2/ERF domain
PROSITE profilePS5103219.82349115IPR001471AP2/ERF domain
PRINTSPR003674.0E-65061IPR001471AP2/ERF domain
CDDcd000187.02E-24150211No hitNo description
PfamPF008473.4E-12150201IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18150211IPR016177DNA-binding domain
PROSITE profilePS5103218.334151209IPR001471AP2/ERF domain
SMARTSM003807.6E-25151215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-18151210IPR001471AP2/ERF domain
PRINTSPR003674.0E-6191211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAKISKKQIQ KDNASNDNNN LNVSNTVVTK AKRTRKTVPR STPPQRSSIY RGVTRHRWTG  60
RYEAHLWDKN CWNESQNKKG RQVYLGAYDN EETAAHAYDL AALKYWGQET IINFPLSNYQ  120
NELKEMDGQS REEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGK VFGNKYLYLG  180
TYATQEEAAT AYDMAAIEYR GLNAVTNFDL SRYIKWLKPN NNNDDNHFDV NSKCNSINDQ  240
NSNIEELDLS FVDNQASLKN NTIDEATLVQ PRPTSATSAL ELLLQSSKFK EMVEMASVTN  300
LTTTLESDQL SQCAFPDDIQ TYFEYEDFNR FEGDHDNMFH DLNSIAPMFN CDDLI
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507769.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267843e-68AC126784.11 Medicago truncatula chromosome 8 clone mth2-36b12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507769.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-108AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S2YP440.0A0A1S2YP44_CICAR; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_004507769.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-94ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]