PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507924.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 214aa    MW: 25036.3 Da    PI: 8.7385
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-1896151156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rrk+ ++tk+q   Le+ F+ +++++  +++ LA++l+L++rq+ vWFqNrRa+ k
  XP_004507924.1  96 RRKKLRLTKDQSAMLENTFKLHNTLNPVQKQALADQLNLKTRQIEVWFQNRRARTK 151
                     79999*************************************************98 PP
2HD-ZIP_I/II111.26.9e-3697184188
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                     +kk+rl+k+q+++LE++F+ +++L+p +K++la +L+l++rq++vWFqnrRARtk+kq+E+dye Lk+++++l++en+rL+ke +e +
  XP_004507924.1  97 RKKLRLTKDQSAMLENTFKLHNTLNPVQKQALADQLNLKTRQIEVWFQNRRARTKLKQTEVDYELLKKHCQNLSDENKRLKKELQEFK 184
                     69**********************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-1880154IPR009057Homeodomain-like
PROSITE profilePS5007117.29793153IPR001356Homeobox domain
SMARTSM003891.4E-1595157IPR001356Homeobox domain
CDDcd000861.35E-1296154No hitNo description
PfamPF000461.8E-1596151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-1797151IPR009057Homeodomain-like
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PfamPF021833.8E-7153184IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.7E-10153195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MENDDEYCNT GLCLGLGMGG HVARKEKKQK LEVKNPLVAC FDLAFELCPK GEDMNINNNN  60
NNNNERFSLE RQYYPNAITC STDSDNNINN NNDNDRRKKL RLTKDQSAML ENTFKLHNTL  120
NPVQKQALAD QLNLKTRQIE VWFQNRRART KLKQTEVDYE LLKKHCQNLS DENKRLKKEL  180
QEFKVEQTPL RIQRLSKVTL CSSCDKLLNR KEDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153RRARTKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507924.11e-155homeobox-leucine zipper protein HAT22-like
TrEMBLA0A1S2YPI81e-154A0A1S2YPI8_CICAR; homeobox-leucine zipper protein HAT22-like
STRINGXP_004507924.11e-154(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-42HD-ZIP family protein