PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004508289.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 1169aa MW: 130301 Da PI: 9.6512

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004508289.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.3e-09	55	88	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W++eE e++++a +++G++ Wk++a + +R + XP_004508289.1 55 QWSKEELERFYEAYREYGKD-WKKVAIAVR-NRNME 88 6***************99.***9999.88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	4.8E-4	52	100	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.92E-9	52	99	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-4	55	90	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-7	55	90	IPR001005	SANT/Myb domain
CDD	cd00167	8.36E-6	56	90	No hit	No description
Pfam	PF06584	7.8E-31	636	736	IPR033471	DIRP domain
SMART	SM01135	1.1E-51	636	737	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1169 aa Download sequence Send to blast
MGPTRKSRSV NKRFSNIREA ASSKDKDAAN TGKNRKKASP GIPKKRKLAD MLGPQWSKEE 60 LERFYEAYRE YGKDWKKVAI AVRNRNMEMV EALYTMNRAY LSLPEGTASV VGLIAMMTDH 120 YSILGGSDSG KESNEDAEIC KMSKKRPRGK HPNDNNPLDG NFSDHSQPHS VASDDGCLSL 180 LKKRHSGIRP HAVRKRTPRV PISYSIGKDN GGKFFSSARQ DSKQMVDTND VTHKIALALA 240 EASQRGGSSK VSGSPNKKNM PSPNLKIGKK HVKSEIVGAK FCNSRMDEGS SELSLGSTEG 300 DNGDYSRKLI QRSGRENTGR GRNQEKGTKH YRKNLEPEEN INKHLNGIKE ASSGTDDGKN 360 QSSFKSCFDT DFANAKSARS SYKGLRKKSK KILFEKDEGS AFDALKTLAD LSLMMPATNP 420 DTESSVQFNE GNCDVVDESK METDNGNSSR KSGKVFSDKA AAAPEVKGVY QFNAGSRKRK 480 QKSFTSKNDE THTDSHLSGS QKIKVTDEVK KSMVKGKRSS VSTAHSRQLK MVKSIGNMSS 540 NINDKIEMDD SSFSPIKALS TNQVGQVNKD RPRRKMEKPK AMVQDPTMSE NIFSSQHDKS 600 IATYWWNSFE CQKAQVKLIN CLSSYQMRRW CTSEWFYSAI DYPWFSKREF VEYLDHVGLG 660 HVPRLTRIEW GVIRSSLGRP RRFSEQFLIE EKHKLNQYRE SVRSHYAEVL AGTKEGLPVD 720 LAQPLIVGQR VIAIHPKTRE IHDGSILTVD HCRYRVQFDQ PELGVEFVMD IDCMPLYPSE 780 NMPMSLIRHH ITPARINENL SELTRNGKPT QRKISEHTIL SASENSDAIK GLCIPPAMHV 840 TGTLSKQGFS SSCKSQAKVV CSEICNGQSA SSSQSPLLER VHSKEADILA ISELTRALDK 900 KELVLSELKH MNDGVSESQK YGDNSVKDSE PFKRNYASVL KQLTEANEQV SSGLFCLRQR 960 NAYQASSSVL SLKPMANFDD PGGQASSSNC SVCHNQESIS QSHIADIVES SRRKAQTMVV 1020 QITQAISDFR KTESKVERIE DAINFVNNRL SATNFLPMDS ITLASQDQLT AGSILNRLAR 1080 CHVQDAELNS SSDQNEMKIP SELISHCLAT LLMIQKCTER QFPPADVAQV LDSAVTSLQP 1140 FCSKNLPIYG EIQKYMGIIR NQILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1169 aa Download sequence Send to blast

MGPTRKSRSV NKRFSNIREA ASSKDKDAAN TGKNRKKASP GIPKKRKLAD MLGPQWSKEE  60
LERFYEAYRE YGKDWKKVAI AVRNRNMEMV EALYTMNRAY LSLPEGTASV VGLIAMMTDH  120
YSILGGSDSG KESNEDAEIC KMSKKRPRGK HPNDNNPLDG NFSDHSQPHS VASDDGCLSL  180
LKKRHSGIRP HAVRKRTPRV PISYSIGKDN GGKFFSSARQ DSKQMVDTND VTHKIALALA  240
EASQRGGSSK VSGSPNKKNM PSPNLKIGKK HVKSEIVGAK FCNSRMDEGS SELSLGSTEG  300
DNGDYSRKLI QRSGRENTGR GRNQEKGTKH YRKNLEPEEN INKHLNGIKE ASSGTDDGKN  360
QSSFKSCFDT DFANAKSARS SYKGLRKKSK KILFEKDEGS AFDALKTLAD LSLMMPATNP  420
DTESSVQFNE GNCDVVDESK METDNGNSSR KSGKVFSDKA AAAPEVKGVY QFNAGSRKRK  480
QKSFTSKNDE THTDSHLSGS QKIKVTDEVK KSMVKGKRSS VSTAHSRQLK MVKSIGNMSS  540
NINDKIEMDD SSFSPIKALS TNQVGQVNKD RPRRKMEKPK AMVQDPTMSE NIFSSQHDKS  600
IATYWWNSFE CQKAQVKLIN CLSSYQMRRW CTSEWFYSAI DYPWFSKREF VEYLDHVGLG  660
HVPRLTRIEW GVIRSSLGRP RRFSEQFLIE EKHKLNQYRE SVRSHYAEVL AGTKEGLPVD  720
LAQPLIVGQR VIAIHPKTRE IHDGSILTVD HCRYRVQFDQ PELGVEFVMD IDCMPLYPSE  780
NMPMSLIRHH ITPARINENL SELTRNGKPT QRKISEHTIL SASENSDAIK GLCIPPAMHV  840
TGTLSKQGFS SSCKSQAKVV CSEICNGQSA SSSQSPLLER VHSKEADILA ISELTRALDK  900
KELVLSELKH MNDGVSESQK YGDNSVKDSE PFKRNYASVL KQLTEANEQV SSGLFCLRQR  960
NAYQASSSVL SLKPMANFDD PGGQASSSNC SVCHNQESIS QSHIADIVES SRRKAQTMVV  1020
QITQAISDFR KTESKVERIE DAINFVNNRL SATNFLPMDS ITLASQDQLT AGSILNRLAR  1080
CHVQDAELNS SSDQNEMKIP SELISHCLAT LLMIQKCTER QFPPADVAQV LDSAVTSLQP  1140
FCSKNLPIYG EIQKYMGIIR NQILALIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	475	480	SRKRKQ
2	570	574	RPRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004508289.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146552	1e-122	AC146552.16 Medicago truncatula chromosome 8 clone mth2-9d1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004508289.1	0.0	protein ALWAYS EARLY 3 isoform X2
Refseq	XP_012573515.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_012573516.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_012573519.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_027192375.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_027192376.1	0.0	protein ALWAYS EARLY 3 isoform X1
TrEMBL	A0A1S3ECE1	0.0	A0A1S3ECE1_CICAR; protein ALWAYS EARLY 3 isoform X1
STRING	XP_004508286.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding