PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004508482.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

YABBY

Protein Properties

Length: 191aa MW: 21756.9 Da PI: 8.5067

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004508482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	216.2	1e-66	6	164	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 ++ ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhC++l svn+a a q l+ ++h ++l++ + + ++ +++ s+s+ + XP_004508482.1 6 IDVATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQEH------HHLQAPSHCMNP---EYRIRSGSTSKCND 91 66789*************************************************9999......333333333332...33444555555555 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + ++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl XP_004508482.1 92 RIAMRTAPTTHLTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 164 555566666667766779***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.5E-71	9	164	IPR006780	YABBY protein
SuperFamily	SSF47095	4.32E-8	108	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	112	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MSTCSIDVAT EQLCYIPCNF CNIVLAVSVP CSSLFDIVTV RCGHCSNLWS VNMAAAFQSL 60 SWQEHHHLQA PSHCMNPEYR IRSGSTSKCN DRIAMRTAPT THLTEERVVN RPPEKRQRVP 120 SAYNQFIKEE IQRIKANNPD ISHREAFSTA AKNWAHFPHI HFGLMLETNN QAKMENVSEK 180 RLMSRAALMN K

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004508482.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT052446	0.0	BT052446.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-9 unknown mRNA.
GenBank	BT133581	0.0	BT133581.1 Medicago truncatula clone JCVI-FLMt-10H8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004508482.1	1e-143	axial regulator YABBY 5
Swissprot	Q8GW46	7e-87	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S2YQV0	1e-141	A0A1S2YQV0_CICAR; axial regulator YABBY 5
STRING	XP_004508482.1	1e-142	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-89	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]