PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508593.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YB
Protein Properties Length: 219aa    MW: 24330.9 Da    PI: 5.1791
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB75.39.2e-2475157385
           NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                     ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c+re+++ti+++ +l al  lGf +y+e++ +
  XP_004508593.1  75 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREDKRTIAPEHVLKALQVLGFSEYIEEVYA 157
                     6899***************************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.8E-3972203IPR009072Histone-fold
SuperFamilySSF471134.35E-3576206IPR009072Histone-fold
PfamPF008081.9E-2178143IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MRVVEGNGKR GLGSVCCPNR MRARTCSLIL SNLLHKFIYQ QPCFPSSLSS RISDLQLSLV  60
SGSIMEPMDI VGKSKEDASL PKATMTKIIK EMLPPDVRVA RDAQDLLIEC CVEFINLISS  120
ESNEVCNRED KRTIAPEHVL KALQVLGFSE YIEEVYAAYE QHKLETMDSL KGGKWSNAAE  180
MTEEEALAEQ QRMFAEARAR MNGGAIATKQ PNGDQSLDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B5e-337619812133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508593.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1367941e-167BT136794.1 Lotus japonicus clone JCVI-FLLj-3M19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508593.11e-163protein Dr1 homolog isoform X2
SwissprotP495926e-88NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A1S2YR301e-162A0A1S2YR30_CICAR; protein Dr1 homolog isoform X2
STRINGXP_004508592.11e-161(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.43e-84nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]