PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004508610.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 190aa MW: 21474 Da PI: 10.4479

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004508610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.2	4.7e-11	36	80	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er RR++i + f Lr+ +P+ +K + iL +++eYIk+L+ XP_004508610.1 36 NIERERRKKITQMFTHLRTTVPSvF-----PKATREVILNETIEYIKELE 80 48*******************55.....8**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.557	29	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-14	30	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-12	31	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.26E-5	33	76	No hit	No description
SMART	SM00353	4.4E-8	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-8	36	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MEENTKNNID PSSTISEMGN RKRVRPLGAK RDEVHNIERE RRKKITQMFT HLRTTVPSVF 60 PKATREVILN ETIEYIKELE KKKKMLEDLK EKMKSVEANL NLLIPCGNRN NSSVMVTVSS 120 NVAFFGIQSV AKPGLVTVIL KVFYNNQAEI LAANVSVDHG NLILAITALI QHRHGNSATV 180 EKIKREILSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004508610.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004508610.1	1e-136	transcription factor bHLH13-like
TrEMBL	A0A1S2YR49	1e-135	A0A1S2YR49_CICAR; transcription factor bHLH13-like
STRING	XP_004508610.1	1e-136	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14330	13	14