PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508776.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 324aa    MW: 37363.1 Da    PI: 4.6153
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508776.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1887140356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ +q++ Le+ Fe ++++  e++++LAk lgL+ rqV +WFqNrRa++k
  XP_004508776.1  87 KKRRLSIDQVQFLEKSFEVENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWK 140
                     5568999**********************************************9 PP
2HD-ZIP_I/II126.41.2e-4086178193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls +qv++LE+sFe e+kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlEkdye+L+++y++l+++ ++L ke+++L++e+++
  XP_004508776.1  86 EKKRRLSIDQVQFLEKSFEVENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYESLHHSYQSLQTDYDNLLKEKDRLKAEVAR 178
                     69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1973144IPR009057Homeodomain-like
PROSITE profilePS5007117.31382142IPR001356Homeobox domain
SMARTSM003891.6E-1885146IPR001356Homeobox domain
CDDcd000862.11E-1687143No hitNo description
PfamPF000466.0E-1687140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-1989149IPR009057Homeodomain-like
PRINTSPR000311.3E-5113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5122138IPR000047Helix-turn-helix motif
PfamPF021831.5E-15142183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAGGSVFTNG SNMNILLQNQ QTPRGYTSQP LDSLFLSSSA PFFGSRSMLS FEDVDGGKRC  60
NRSFLNGFDM DENGDDGMDE YFHQSEKKRR LSIDQVQFLE KSFEVENKLE PERKTKLAKD  120
LGLQPRQVAI WFQNRRARWK TKQLEKDYES LHHSYQSLQT DYDNLLKEKD RLKAEVARLT  180
EKVAREKQEG KLDESESEKN GLKESVMKKS MVDSVSEGEG SKVSIVEACN NNNNNNNKIE  240
DISSARSDIL DCESPRYTDG VLVRNDAFEP EYQSDISQDE EENLLPPYIF TKLEDVNYSN  300
PPHTSSTYQF QEEEDHHALW PWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508776.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508776.10.0homeobox-leucine zipper protein ATHB-16-like
TrEMBLA0A1S2YRI50.0A0A1S2YRI5_CICAR; homeobox-leucine zipper protein ATHB-16-like
STRINGXP_004508776.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-42homeobox 1