PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004508828.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

M-type_MADS

Protein Properties

Length: 248aa MW: 28602.6 Da PI: 4.9186

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004508828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.6	1.9e-09	9	51	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k i+n+ r++tf +R++g+ KK + S+ + ++++i++ + XP_004508828.1 9 KYINNEKVRKITFMNRKKGLTKKVSDFSIKSGGKACLIMYDGD 51 5799***********************************9655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.8E-9	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-15	1	77	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.101	1	48	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.35E-15	2	83	No hit	No description
PRINTS	PR00404	9.3E-5	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.2E-10	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-5	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGRAKVAIKY INNEKVRKIT FMNRKKGLTK KVSDFSIKSG GKACLIMYDG DDNVAPTIWP 60 PDPTLVNSML QEYENQKIET SLKIFDIKDY FKIKKEIIEA EILKVKKAIL GNKFPTWDPS 120 FNNMQVEHLT AFMETINAKI QDYFTNHVDL PPNSSTNQLC QLVECDDLEV KPINVCQLME 180 CDDLEVKSIN ERANQFADVD DWTNQLDDDI LNWIRQPDQF SWKDISLLPP TEHESASSNA 240 LTRPKYSF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004508828.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004508828.1	0.0	uncharacterized protein LOC101509127
TrEMBL	A0A1S2YRM7	0.0	A0A1S2YRM7_CICAR; uncharacterized protein LOC101509127
STRING	XP_004508828.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-12	M-type_MADS family protein