PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508941.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 247aa    MW: 28121.9 Da    PI: 8.7047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1895149256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  XP_004508941.1  95 RKKLRLSKNQSAILEETFKQHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 149
                     788899***********************************************98 PP
2HD-ZIP_I/II127.84.7e-4195184191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LEe+F+++++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l
  XP_004508941.1  95 RKKLRLSKNQSAILEETFKQHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTDENRRLQKEVQELR-AL 184
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.5E-172474IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.606.5E-1883145IPR009057Homeodomain-like
SuperFamilySSF466891.38E-1887152IPR009057Homeodomain-like
PROSITE profilePS5007117.26591151IPR001356Homeobox domain
SMARTSM003891.7E-1593155IPR001356Homeobox domain
CDDcd000865.45E-1595152No hitNo description
PfamPF000463.7E-1695149IPR001356Homeobox domain
PRINTSPR000311.5E-5122131IPR000047Helix-turn-helix motif
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PRINTSPR000311.5E-5131147IPR000047Helix-turn-helix motif
SMARTSM003403.1E-26151194IPR003106Leucine zipper, homeobox-associated
PfamPF021835.3E-12151185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MMLIQKEDLS LSLSLNFLHK FSSNSSDRNS ETLTRGIDVN RLPSTVIDCE EEETGVSSPN  60
STVSSVSGKR SERDDVDRAC SGGNISDEED AETARKKLRL SKNQSAILEE TFKQHNTLNP  120
KQKLALAKQL GLRPRQVEVW FQNRRARTKL KQTEVDCEVL KRCCENLTDE NRRLQKEVQE  180
LRALKLSPQF YMQMAPPTTL TMCPSCERVA VPSHPMAQPR TRPIHIGPWA SSAPLAHRPF  240
EFDVFRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143151RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508941.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0155661e-104KP015566.1 Vicia sativa subsp. sativa SSR marker NAC-VSspS-98 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508941.10.0homeobox-leucine zipper protein HAT4-like
SwissprotP466013e-94HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A1S2YRV80.0A0A1S2YRV8_CICAR; homeobox-leucine zipper protein HAT4-like
STRINGXP_004508941.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.13e-85homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]