PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509044.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 288aa    MW: 32128.2 Da    PI: 8.2062
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.8e-18142196256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  XP_004509044.1 142 RKKLRLTKDQSAMLEENFKQHSTLNPKQKQALARELNLLPRQVEVWFQNRRARTK 196
                     788899***********************************************98 PP
2HD-ZIP_I/II124.26e-40142231191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k+q+++LEe+F+++++L+p++K++lareL+l prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+eL+ +l
  XP_004509044.1 142 RKKLRLTKDQSAMLEENFKQHSTLNPKQKQALARELNLLPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELK-AL 231
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.908138198IPR001356Homeobox domain
SMARTSM003894.7E-15140202IPR001356Homeobox domain
CDDcd000865.13E-16142199No hitNo description
PfamPF000468.1E-16142196IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-17142196IPR009057Homeodomain-like
SuperFamilySSF466896.42E-17142206IPR009057Homeodomain-like
PROSITE patternPS000270173196IPR017970Homeobox, conserved site
PfamPF021831.2E-10198232IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.7E-26198241IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGLDQDASSN NSGLPLILGL ALTLSQQETI TPPPSNKITK PFNNSSNFIT CSTSNNHNNN  60
LQAELPSLTL GLSYPKNVNN NKVYYEDPLD FSTQTSPHHS VVSSFSSGRV KRERDVSSEE  120
VEAIERVCSR VSDEEEDAVA ARKKLRLTKD QSAMLEENFK QHSTLNPKQK QALARELNLL  180
PRQVEVWFQN RRARTKLKQT EVDCEFLKKC CETLTDENRR LQKEVQELKA LKLTQPLYMP  240
MPAATLTMCP SCERLGGVSG GGASNKTTFS MAPKPHFYNP FTNSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190198RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509044.10.0homeobox-leucine zipper protein HAT22
SwissprotP466049e-91HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1S2YS470.0A0A1S2YS47_CICAR; homeobox-leucine zipper protein HAT22
STRINGXP_004509044.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-90HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]