PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509047.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 281aa    MW: 32470.8 Da    PI: 6.6571
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151463148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+ +++q+G+  +W + ++++  ++R++k+c++rw++yl
   XP_004509047.1 14 RGPWSPEEDSKLKAYIQQHGTVaNWIALPQKIVdLKRCGKSCRLRWLNYL 63
                     89******************88**************************97 PP
2Myb_DNA-binding40.94.9e-1371112346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++eEd ++  +    G++ W+ Ia++++ gRt++++k++w++
   XP_004509047.1  71 IFSEEEDNIICSLYVNIGSR-WSVIAAHLP-GRTDNDIKNYWNT 112
                      59******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3963IPR017930Myb domain
SuperFamilySSF466895.59E-2511110IPR009057Homeodomain-like
SMARTSM007171.7E-101365IPR001005SANT/Myb domain
PfamPF002492.1E-131463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-231570IPR009057Homeodomain-like
CDDcd001676.30E-81663No hitNo description
PROSITE profilePS5129420.6964118IPR017930Myb domain
SMARTSM007171.8E-1168116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-2471118IPR009057Homeodomain-like
PfamPF002491.3E-1172112IPR001005SANT/Myb domain
CDDcd001671.11E-772111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDSKLKAYIQ QHGTVANWIA LPQKIVDLKR CGKSCRLRWL  60
NYLRPNLKHG IFSEEEDNII CSLYVNIGSR WSVIAAHLPG RTDNDIKNYW NTKLKKKLLT  120
KQRKEQQAQA RKLFSLNQEI KRESGNLLLP VEVIPQTHND WPIEHYSFPI PITKASSVQD  180
NNLNNIQTLS IKNLETKLEE VEFSDSNQLQ QINVNINSQY PCDIYFPQDQ LYYPSTESIN  240
WGDIMSSLVS DIEGCNQTMP QEDVTFDESM FYGIMQCLQT Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24141207110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509047.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509047.10.0transcription factor RAX3 isoform X1
SwissprotQ9M2Y98e-78RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A1S2YS410.0A0A1S2YS41_CICAR; transcription factor RAX3 isoform X1
STRINGXP_004509047.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-69myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]