PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509073.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 235aa MW: 25538.1 Da PI: 7.6885

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509073.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.3	1.8e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_004509073.1 2 SCNGCRVLRKGCSDSCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISNVPETQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_004509073.1 97 AVETVLR 103 *998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.92	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MSCNGCRVLR KGCSDSCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISNVPETQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGMLRSL PELTTLDAPP 120 VAADEASEAE DAGTDVILRI RDPNQNFRLA NSRSNNKVYA GGKRRRSEEG VNIPAAINLD 180 LRLTPIFLQK ASENRRPGSP SMTSEESVTT TVCLEAGIGD PWTHGGDRKV LNLFI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509073.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509073.1	1e-174	LOB domain-containing protein 38
Swissprot	Q9SZE8	2e-81	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A1S2YS76	1e-172	A0A1S2YS76_CICAR; LOB domain-containing protein 38
STRING	XP_004509073.1	1e-173	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	4e-76	LOB domain-containing protein 39