PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509147.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 479aa    MW: 54345.9 Da    PI: 8.3738
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.3e-19117207199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k l++s+v +  ++ lp  +++++  +  +++t+tledesgr+++ k+i +k++    l++GW++F   ++L egD+vvF+l++ ++f  +v 
  XP_004509147.1 117 FVKSLVRSHVASCFWMGLPVAYCKRNLPD--KDTTITLEDESGREYKTKYIACKTG----LSAGWRQFSAVHKLLEGDVVVFQLVEPTKF--KVY 203
                     89*********************999534..5679***************777776....***********************9876666..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  XP_004509147.1 204 IIRA 207
                     9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-23110208IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-21111208IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-25115206No hitNo description
PROSITE profilePS5086313.169117208IPR003340B3 DNA binding domain
PfamPF023622.6E-16117207IPR003340B3 DNA binding domain
SMARTSM010192.3E-24117208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MSKMVAVDEK KRDGMVQQND QVTLAFHGGD VYDGVPLAHC SKKSPLDDKQ NKVVDNKCKL  60
LKNPTKQATP DESQSQKFAS SMKVTTDGTF SRGEAISSAV IQAEGLRSHL GSEFPSFVKS  120
LVRSHVASCF WMGLPVAYCK RNLPDKDTTI TLEDESGREY KTKYIACKTG LSAGWRQFSA  180
VHKLLEGDVV VFQLVEPTKF KVYIIRASNN LKELEGIILN PDSCTKQKVG GRNNIDSDAV  240
ACNSPKRKNG KQVPQDIQKK KRTTISKMEA KAKKSIENSE NDSEDAFSEI FEGFKMPEFK  300
DLKGFESFNI IVDGMQIDDE FSTEVRNKYY KLCYSQQAYL HENLIKGLNY KLVSGIICET  360
VHIADAIKVS VISTPRVEFS SWDKTLLAFE HLGMNVQFLR VRLRRLVSIA YENVDAEETR  420
RYLAYRTERS RADDEINNVE MKLEELKEAC YGFSAYLESL KFKAENYQHK FHKEVAANW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245261KRKNGKQVPQDIQKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509147.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A1S2YSD00.0A0A1S2YSD0_CICAR; B3 domain-containing protein Os01g0234100-like
STRINGXP_004509147.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-34B3 family protein