PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509243.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 531aa    MW: 59221.2 Da    PI: 5.6305
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.81.5e-881695302374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +e L+++A+++++++l+laqa+L+rl+++ +sp+g+p++R+a++f+ AL++ l++      ++ pp+ +s  + ++++  +k+fs +sPi+ fs 
  XP_004509243.1 169 IEELIRAADCFDNSHLQLAQAILERLNQRlRSPTGKPLHRAAFHFKDALQSLLSG----SNRTNPPRLSSMVEIVQTIRTFKAFSGISPIPMFSI 259
                     679*************************99************************9....55667888888888********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +t Nqa+lea++g++ +H++Df+i+ G+Q+++L++++a+++ +g+p l iT+v+++e   + e + ++e+L++fA+ lg++++ +++  +++e++
  XP_004509243.1 260 FTVNQALLEALHGSSFMHVVDFEIGLGIQYASLMKEIAEKAvNGSPLLHITAVVPEE--YAVESRLIRENLNQFANDLGIRVQVDFVPLRTFETV 352
                     ****************************************99*************66..99999**********************9999***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres.. 279
                     ++++ r+  gE++a+ l  +++  l ++      + ++L+ ++++ P vvv+v+ e  ++   ++sF ++++++le+ys++++sl+a++++    
  XP_004509243.1 353 SFKAVRFVDGEKTAILLTPAIFCRLGSD-----GTAAFLSDIRRITPGVVVFVDGEgwTEAaAAASFRRGVVNSLEFYSMMLESLDASVAAGGgg 442
                     *********************9999332.....34789******************543444677***********************9998888 PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e+++ +E  ll+++i  +v ++g++          Wre++  aG++pv+ls++a  qa++ll+kv+ +g++v +++++lvl W++r++v++SaWr
  XP_004509243.1 443 EWARRIEMLLLRPKIIAAVEAAGRR-------TTPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWR 530
                     9**********************98.......789***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.762142510IPR005202Transcription factor GRAS
PfamPF035145.3E-86169530IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MRVPPVSSPP KLTTQNVVVP NPNPTSNPNS TTTTTTTLCY EPRSVLELCR SPSPEKKPTQ  60
QEEVEEDHAS LPNLDWWDSI MKDLGLQDDS STPIPLLKNT NINTHETSNP CIPEIYPNPS  120
HDQFDQPQDF TTLSDIYSNQ NLAYNYPNTN TNLDHLVNDF NNNSNWDFIE ELIRAADCFD  180
NSHLQLAQAI LERLNQRLRS PTGKPLHRAA FHFKDALQSL LSGSNRTNPP RLSSMVEIVQ  240
TIRTFKAFSG ISPIPMFSIF TVNQALLEAL HGSSFMHVVD FEIGLGIQYA SLMKEIAEKA  300
VNGSPLLHIT AVVPEEYAVE SRLIRENLNQ FANDLGIRVQ VDFVPLRTFE TVSFKAVRFV  360
DGEKTAILLT PAIFCRLGSD GTAAFLSDIR RITPGVVVFV DGEGWTEAAA AASFRRGVVN  420
SLEFYSMMLE SLDASVAAGG GGEWARRIEM LLLRPKIIAA VEAAGRRTTP WREAFYGAGM  480
RPVQLSQFAD FQAECLLAKV QIRGFHVAKR QAELVLFWHE RAMVATSAWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-2417452925378Protein SCARECROW
5b3h_A4e-2417452924377Protein SCARECROW
5b3h_D4e-2417452924377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509243.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484840.0AC148484.17 Medicago truncatula chromosome 8 clone mth2-46g10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509243.10.0scarecrow-like protein 15
SwissprotO232101e-166SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1S2YSK70.0A0A1S2YSK7_CICAR; scarecrow-like protein 15
STRINGXP_004509243.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-167GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]