PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509268.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 171aa    MW: 19906.8 Da    PI: 9.7554
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.42.2e-302275357
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                    ++rYkeC kNhAas+Ggh++DGCgEfmps ge++t++ + CaAC CHR+FHR++ 
  XP_004509268.1 22 NIRYKECVKNHAASIGGHVTDGCGEFMPS-GEQNTPQHFICAACHCHRSFHRKQI 75
                    689*************************9.8889*******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.7E-272375IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-182481IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.9E-282474IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.4332574IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.56E-1695167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2499166IPR009057Homeodomain-like
TIGRFAMsTIGR015653.0E-23105162IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MIPNNTVPQQ PPKRDLDPTL LNIRYKECVK NHAASIGGHV TDGCGEFMPS GEQNTPQHFI  60
CAACHCHRSF HRKQIHPIRL LTPSTEDINM FYYNNNDDGL QLSTKKRSRT KFTQQQKDRM  120
MEFAQKIGWK LQKQHEEEVD KFCCQLGFKT QVFKVWMHNS KQAMKKIKTG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-171041631675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509268.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192326.11e-127zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW72e-49ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A3Q7Y3061e-125A0A3Q7Y306_CICAR; zinc-finger homeodomain protein 6-like
STRINGXP_004509268.11e-128(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.16e-52homeobox protein 24