PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509344.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 335aa MW: 39328.2 Da PI: 6.1271

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.6	2.5e-53	7	134	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pp frFhPtd elv++yL+kkv++++++l +vik++d+y++ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v+ XP_004509344.1 7 PPEFRFHPTDGELVDYYLRKKVASQNIDL-DVIKDIDLYRIEPWDLQErcKIGNeEQHEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVY 100 889************************.9***********953444442445*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++l+g++ktLvfykgrap+g+ktdW+mheyrl XP_004509344.1 101 E-RTKLIGMRKTLVFYKGRAPNGHKTDWIMHEYRL 134 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-56	4	155	IPR003441	NAC domain
PROSITE profile	PS51005	56.398	6	155	IPR003441	NAC domain
Pfam	PF02365	3.2E-27	7	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MKESVVPPEF RFHPTDGELV DYYLRKKVAS QNIDLDVIKD IDLYRIEPWD LQERCKIGNE 60 EQHEWYFFSH KDKKYPTGTR TNRATMAGFW KATGRDKSVY ERTKLIGMRK TLVFYKGRAP 120 NGHKTDWIMH EYRLQTLQNA PPQEEGWVVC KAFKKKTNVQ TKTNERWDPS NLYDDEEVSG 180 IISRVDPIDL IIRQPQRISA QNFLYKQEIE PEANNLAFMM HSDQLLVPLP QLESPSLQSK 240 RQNSMSIISE NNNNDDSLYS KIKSKEKVTD WRDLDKFVAS QLSQEDRCHD HTSSDMALLL 300 LQSSRNEEEN KFSSFFTTSP DCDFGICVFE KYINE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-50	6	156	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509344.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269\|PubMed:17581762, ECO:0000269\|PubMed:17722694}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149546	2e-99	AC149546.14 Medicago truncatula chromosome 8 clone mth2-70o13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509344.1	0.0	NAC domain-containing protein 37
Swissprot	Q9SL41	1e-133	NAC37_ARATH; NAC domain-containing protein 37
TrEMBL	A0A1S2YST9	0.0	A0A1S2YST9_CICAR; NAC domain-containing protein 37
STRING	XP_004509344.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4565	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18060.1	1e-129	vascular related NAC-domain protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Negi S,Tak H,Ganapathi TR Cloning and functional characterization of MusaVND1 using transgenic banana plants. Transgenic Res., 2015. 24(3): p. 571-85 [PMID:25523085] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]