PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509512.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 232aa MW: 26099.7 Da PI: 9.2258

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.5	4.7e-11	100	145	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT+ E++l+v + ++G+g+W++Iar+ ++t+ +++s+ ++ XP_004509512.1 100 KENWTQLEHDLFVMGLIEFGKGRWSKIARHYLCNKTPQEVQSYALS 145 679*************************99899*****9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	13.171	98	151	IPR017884	SANT domain
SMART	SM00717	3.7E-8	99	149	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-8	100	142	IPR009057	Homeodomain-like
Pfam	PF00249	7.7E-9	100	144	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.16E-9	102	150	IPR009057	Homeodomain-like
CDD	cd00167	7.32E-9	102	147	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MPIEIIDLTN SPDSTPPPPR FSSNTTMILN FGHVSPNPNM HHQHQTTLLV PTPPGHTYET 60 ASQIATGWFQ PGMHGGRVTT LLEPIPESNR YLFPNGVRLK ENWTQLEHDL FVMGLIEFGK 120 GRWSKIARHY LCNKTPQEVQ SYALSFFKHM PTTYMYGLRR RKIISNTTYS ASTRNIRNFM 180 VAPYGGEAST SNNTINYETF KIMSSGASTS MTMPNAIANG EVDLELRLGG LY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509512.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027192183.1	1e-167	uncharacterized protein LOC101488688
TrEMBL	A0A3Q7XV56	1e-166	A0A3Q7XV56_CICAR; uncharacterized protein LOC101488688
STRING	XP_004509512.1	1e-173	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14942	6	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49010.1	2e-11	MYB family protein