PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509783.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 229aa    MW: 26032.3 Da    PI: 8.2891
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509783.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer69.46e-2260114358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     ++r+keC+kNh    Gg+++DGC  f+p+ g egt + + CaAC CHRnFHR+e+ 
  XP_004509783.2  60 EARFKECRKNHSYGNGGYSLDGCLAFLPD-GVEGTREFFICAACRCHRNFHRQETI 114
                     689*************************8.999********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-1357113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.9E-2161113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.3E-1862112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.37363112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.91E-17152225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-28153227IPR009057Homeodomain-like
TIGRFAMsTIGR015652.5E-24166222IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLFSIPLFVF FSTIFLSSEQ IMEIEEKGDE MITVSSEPSY VETNRVTNSG MKMSNHEVEE  60
ARFKECRKNH SYGNGGYSLD GCLAFLPDGV EGTREFFICA ACRCHRNFHR QETIPTAFPL  120
NSSYHHQPTP LTTVYETPNG YVQMSGPPRG SSTSGGDGEG SSSKSKKRFR TKFTHQQKEK  180
MFDFADKSGW KIRKKDDKIV EEFCNQIGVK CQVFKAWVHN NKHTLGNKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-191672241875ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509783.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509783.21e-173zinc-finger homeodomain protein 2-like
TrEMBLA0A1S2YTR71e-172A0A1S2YTR7_CICAR; zinc-finger homeodomain protein 2-like
STRINGXP_004509783.11e-157(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-44homeobox protein 22