PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509801.2

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 259aa MW: 29387.6 Da PI: 5.3354

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509801.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62.7	9.1e-20	11	107	2	98
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 C +C+ +rr+ +++C + +yfp +++++f + +FG +n+++l++++++++r++a +s++ e++a+ P +G +g l+l +q++++ el+ XP_004509801.2 11 CLVCRQQRRRHNQECEMGQYFPIDRHEDFDRACYIFGLNNIIRLMQSVEKHQRHAAGNSILLEGRAWRLYPSSGLLGYQLELGSQVSSSLIELQN 105 99************************************************************************************999998887 PP DUF260 97 lk 98 ++ XP_004509801.2 106 AN 107 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.086	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-19	11	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSHRNTRVIE CLVCRQQRRR HNQECEMGQY FPIDRHEDFD RACYIFGLNN IIRLMQSVEK 60 HQRHAAGNSI LLEGRAWRLY PSSGLLGYQL ELGSQVSSSL IELQNANRLL ELCRNHANQD 120 HDESNNPLLS LSLATPSSNP HLSNQLGSSA SQMSSLAITP IEHMGGVETM EAYKINQIMS 180 TRERGESSNT ASNRNTTLQE LQADDKGKQI VVEENESEAT NEEEDSTPME INAEPGDFSV 240 FCFCNLSVHF HYPYIPYAR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509801.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027192119.1	1e-174	LOB domain-containing protein 22-like
TrEMBL	A0A3Q7XF64	1e-173	A0A3Q7XF64_CICAR; LOB domain-containing protein 22-like
STRING	XP_004509801.1	1e-173	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16300	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19820.1	2e-15	LOB domain-containing protein 9