PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509817.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 375aa MW: 43160.4 Da PI: 6.9384

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509817.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.7	2.8e-15	194	237	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+riN+++++Lr+l+P+ +K++ a+iLe A+eYIk+Lq XP_004509817.1 194 VTERNRRKRINKGLFTLRSLVPNI-----TKMDRAAILEDAIEYIKELQ 237 57*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.0E-9	10	117	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.783	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-16	189	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.17E-13	190	240	No hit	No description
SMART	SM00353	3.0E-15	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-13	194	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	194	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00299	310	372	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MSGMRVVEWL RPLVETKAWD YVVVWKYGND PTRFIEWMGC CCGGGNIEHV KFEEKMDDEQ 60 YNLGPICRDT LFYHPVRTKS CEALAKFPFS ISLYSSVHGE VAISQQPRWL IQQIPKDINM 120 MEFISAHFCV SINQEAISEQ SYTNRNFNDH YTLTPSIEGL SSGSNPSTEH SKGEDKEKLV 180 REPQKEVYHA KNLVTERNRR KRINKGLFTL RSLVPNITKM DRAAILEDAI EYIKELQKQE 240 IKLQEEVKAL EVEDCEKNTL QLRVKTEKEQ AKGTRSLPLI ELNQSSSDST RKTKMKLQVE 300 VNHIGGTEFL IKLCCEQKKG GFSRLMEAIH SFGLHVVHAN MITFDGIVSN NLMVEATEQD 360 IHPMKLREYL IQQTG

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MSGMRVVEWL RPLVETKAWD YVVVWKYGND PTRFIEWMGC CCGGGNIEHV KFEEKMDDEQ  60
YNLGPICRDT LFYHPVRTKS CEALAKFPFS ISLYSSVHGE VAISQQPRWL IQQIPKDINM  120
MEFISAHFCV SINQEAISEQ SYTNRNFNDH YTLTPSIEGL SSGSNPSTEH SKGEDKEKLV  180
REPQKEVYHA KNLVTERNRR KRINKGLFTL RSLVPNITKM DRAAILEDAI EYIKELQKQE  240
IKLQEEVKAL EVEDCEKNTL QLRVKTEKEQ AKGTRSLPLI ELNQSSSDST RKTKMKLQVE  300
VNHIGGTEFL IKLCCEQKKG GFSRLMEAIH SFGLHVVHAN MITFDGIVSN NLMVEATEQD  360
IHPMKLREYL IQQTG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509817.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509817.1	0.0	transcription factor ABORTED MICROSPORES isoform X2
TrEMBL	A0A1S2YTU1	0.0	A0A1S2YTU1_CICAR; transcription factor ABORTED MICROSPORES isoform X2
STRING	XP_004509816.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	9e-50	bHLH family protein