PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509897.2

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 351aa MW: 41519.9 Da PI: 9.4598

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509897.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.9	9.3e-15	11	96	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++ GF ++++s+k ++ge + Cs eg++ +++ + +t +++ +C k+++k++kdg w++tk+e +H+H+ + XP_004509897.2 11 SFYEEYASRKGFGWKIRSSRKW-QDGELCYLILSCSIEGSKVSKNLC---TLKTLPTKVNSCPVKIVIKLDKDGLWYITKFEPNHTHKTS 96 5**************99998.8888*********9998776...8899999999*************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-11	11	96	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-11	217	255	IPR018289	MULE transposase domain
Pfam	PF10551	4.1E-9	256	292	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MCFSCLDEVK SFYEEYASRK GFGWKIRSSR KWQDGELCYL ILSCSIEGSK VSKNLCTLKT 60 LPTKVNSCPV KIVIKLDKDG LWYITKFEPN HTHKTSPTKA RLFKANKKMN LHVKRTIQIN 120 DYVGVRMNKT FQPLVKDAGG HENVPFCERD VRNYVNKERR AIGKEGDGKA LISYFYQMRE 180 QNSDFFYDID LDDDFYIRNV FWTDARSRAA YEYFGYVVTF DTTYLTNKYD MPFVVFVGVN 240 HHGQSTLLGC GLLSGKVPLD IMTNQCKAIK NAIELVFPTT RRRWCLWHIM KKIPEKLYQH 300 NEYKKIKFAL KEAVYDTFTK ETFEEKWCFF IKKFELQQND WLNGLYNERH R

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MCFSCLDEVK SFYEEYASRK GFGWKIRSSR KWQDGELCYL ILSCSIEGSK VSKNLCTLKT  60
LPTKVNSCPV KIVIKLDKDG LWYITKFEPN HTHKTSPTKA RLFKANKKMN LHVKRTIQIN  120
DYVGVRMNKT FQPLVKDAGG HENVPFCERD VRNYVNKERR AIGKEGDGKA LISYFYQMRE  180
QNSDFFYDID LDDDFYIRNV FWTDARSRAA YEYFGYVVTF DTTYLTNKYD MPFVVFVGVN  240
HHGQSTLLGC GLLSGKVPLD IMTNQCKAIK NAIELVFPTT RRRWCLWHIM KKIPEKLYQH  300
NEYKKIKFAL KEAVYDTFTK ETFEEKWCFF IKKFELQQND WLNGLYNERH R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509897.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509897.2	0.0	protein FAR1-RELATED SEQUENCE 4-like
TrEMBL	A0A1S2YTZ9	0.0	A0A1S2YTZ9_CICAR; protein FAR1-RELATED SEQUENCE 4-like
STRING	XP_004509897.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	6e-51	FAR1 family protein