PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509986.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 429aa MW: 47826.7 Da PI: 6.1886

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	6.1e-06	320	358	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_004509986.1 320 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 358 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.576	309	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.22E-11	319	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.70E-7	319	362	No hit	No description
SMART	SM00353	0.0049	320	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-9	323	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MAEEQFQGSG NWWETPARNM RFESWQQQQQ QHHDTMSASG SSSVVFHDTL KLQPSDSSNS 60 NNDSNLHMMD LGLSSQTIDW NQASLLGEKS SEGSFRSMLQ ENLNSSNTNF QQENEGVRVG 120 LSHQVNWKQE KLFSTESSNN EFKQVNRGFS LDQTQFSPQY SSEESNMISQ GLSACSSTTF 180 QIDSSTIYGN SSMLQGLLGN ETNQIQQQQA MNFPYSTSYG LTTNELMPSW SKVTHQKQQP 240 QNNQLHFTNN APFWNASEGT IKDAPSSFLP PFATPIFGTP QPKNISEGRD SSSVAKKSGS 300 EPAPKRPKNE TPSPLPAFKV RKEKMGDRIT ALQQLVSPFG KTDTASVLSE AIEYIKFLHE 360 QVTVLSTPYM KSGAPIQHQQ NSGKSKETEG PKQDLRSRGL CLVPVSSTFP MTHEPTVEYW 420 TPTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MAEEQFQGSG NWWETPARNM RFESWQQQQQ QHHDTMSASG SSSVVFHDTL KLQPSDSSNS  60
NNDSNLHMMD LGLSSQTIDW NQASLLGEKS SEGSFRSMLQ ENLNSSNTNF QQENEGVRVG  120
LSHQVNWKQE KLFSTESSNN EFKQVNRGFS LDQTQFSPQY SSEESNMISQ GLSACSSTTF  180
QIDSSTIYGN SSMLQGLLGN ETNQIQQQQA MNFPYSTSYG LTTNELMPSW SKVTHQKQQP  240
QNNQLHFTNN APFWNASEGT IKDAPSSFLP PFATPIFGTP QPKNISEGRD SSSVAKKSGS  300
EPAPKRPKNE TPSPLPAFKV RKEKMGDRIT ALQQLVSPFG KTDTASVLSE AIEYIKFLHE  360
QVTVLSTPYM KSGAPIQHQQ NSGKSKETEG PKQDLRSRGL CLVPVSSTFP MTHEPTVEYW  420
TPTFGGTFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509986.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509986.1	0.0	transcription factor bHLH123-like isoform X2
Swissprot	Q8GXT3	2e-82	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A1S2YU67	0.0	A0A1S2YU67_CICAR; transcription factor bHLH123-like isoform X2
STRING	XP_004509985.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-83	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]