PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004510110.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

SBP

Protein Properties

Length: 281aa MW: 31670 Da PI: 8.5067

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004510110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.7	1.2e-41	184	261	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ XP_004510110.1 184 RCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQH 261 6**************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.9E-35	177	246	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.376	182	259	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-38	183	262	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.3E-31	185	258	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009554	Biological Process	megasporogenesis
GO:0009556	Biological Process	microsporogenesis
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MLDYEWGNPS NIMLTGNEDA SAAAASDQAH RQLFDHYTSQ TMLSDNYLHH PSGPNININT 60 TDFTHHHFNP QQQHHMHHPF FDPRAYQAAS STNSYPPPQP PPPPSMLSLD PLPHVNTHNC 120 APGLLLVPKS EDVGRPMDFV GSRIGLNLGG RTYFSSSEDD FVTRLYRRSR PPEPGSSASS 180 NSPRCQAEGC NADLSQAKHY HRRHKVCEFH SKAATVIAAG LTQRFCQQCS RFHLLSEFDN 240 GKRSCRKRLA DHNRRRRKTQ HPNTQDIHKS HNTLEIPASN S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-33	175	258	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00090	SELEX	Transfer from AT1G02065	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004510110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510110.1	0.0	squamosa promoter-binding-like protein 8 isoform X2
Swissprot	Q8GXL3	3e-79	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A1S2YUE0	0.0	A0A1S2YUE0_CICAR; squamosa promoter-binding-like protein 8 isoform X2
STRING	XP_004510109.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	5e-74	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]