PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510297.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 835aa    MW: 92252.7 Da    PI: 6.5379
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-181775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  XP_004510297.1 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 75
                    5679*****************************************************97 PP
2START177.67.3e-561583662205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v+ ++  g+++l 
  XP_004510297.1 158 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPLWFRDCRAIDIVNVLPTAngGTIELL 251
                     7899******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+   ++g++vi+++S+ ++q+ p+    +++vRa +lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_004510297.1 252 YMQLYAPTTLAPaRDFWLLRYTSVVEDGSLVICERSLKNTQNGPSmppVPHFVRADMLPSGYLIRPCEGGGSIIHVVDHMDLEPWSVPEVLRPLY 346
                     *******************************************999999********************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt++a+l+++++
  XP_004510297.1 347 ESSTMLAQKTTMAALRHLRQ 366
                     ***************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4351276IPR001356Homeobox domain
SMARTSM003891.5E-151480IPR001356Homeobox domain
SuperFamilySSF466893.08E-161678IPR009057Homeodomain-like
CDDcd000866.73E-171777No hitNo description
PfamPF000464.4E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-181975IPR009057Homeodomain-like
CDDcd146862.20E-469108No hitNo description
PROSITE profilePS5084824.848148362IPR002913START domain
CDDcd088758.40E-79152367No hitNo description
Gene3DG3DSA:3.30.530.203.9E-23157363IPR023393START-like domain
SuperFamilySSF559615.22E-38157367No hitNo description
SMARTSM002341.1E-41157367IPR002913START domain
PfamPF018521.5E-53158366IPR002913START domain
PfamPF086702.4E-50692834IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MAMSCKDGNK HLMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPR  60
QIKVWFQNRR CREKQRKESF RLQGVNRKLT AMNKLLMEEN DRLQKQVSHL VYENGYFRQN  120
TQNATKDTSC ESVVTSGQHN MSSQHPPRDA SPAGLLSIAE ETLAEFLSKA TGTAVEWVQM  180
PGMKPGPDSI GIVAISHGCT GVAARACGLV GLEPTRVAEI LKDRPLWFRD CRAIDIVNVL  240
PTANGGTIEL LYMQLYAPTT LAPARDFWLL RYTSVVEDGS LVICERSLKN TQNGPSMPPV  300
PHFVRADMLP SGYLIRPCEG GGSIIHVVDH MDLEPWSVPE VLRPLYESST MLAQKTTMAA  360
LRHLRQISHE VSQSNVTGWG RRPAALRALS QRLSRGFNEA LNGFTDEGWT MMGNDGVDDV  420
TILVNSSPEK LMGLNLSFGN GFPSVSNAVL CAKASMLLQN VPPAILLRFL REHRSEWADT  480
NMDAYTAAAI KVGPCSLTGS RIGNYGGQVI LPLAHTIEHE EFLEVIKLDG VSHSPEDAML  540
PRELFLLQLC SGMDENAIGT CAELIFAPID ASFADDAPLL PSGFRIIPLE SGKEASSPNR  600
TLDLASALDI GPTGNRASSD NAGNSGCVRS VMTIAFEFAF ESHMQENVAC MARQYVRSII  660
SSVQRVALAL SPSHLSPHGG LRSPLGTPEA QTLAHWICNS YRCYLGVELL KSNNEGKESI  720
LKSLWHHSDA VLCCTLKALP VFTFSNQAGL DMLETTLVAL QDITLEKIFD DHGRKTLFSE  780
FPQIIQQGFA CLQGGICLSS MGRPVSYERV VAWKVLNDEE NAHCICFMFM NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510297.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510297.10.0homeobox-leucine zipper protein ATHB-15-like isoform X2
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1S2YUW00.0A0A1S2YUW0_CICAR; homeobox-leucine zipper protein ATHB-15-like isoform X2
STRINGXP_004510296.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]