PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004510409.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 252aa MW: 28295.9 Da PI: 8.7581

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004510409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.5	2.6e-12	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+e l+ +++++G g Wk I + + R+ ++k++w++ XP_004510409.1 5 KLKWTQEEEEALIAGIEKYGAGKWKNILVDPQfapllTSRSNIDLKDKWRN 55 689***********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.744	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.44E-15	3	59	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-8	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-13	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	4.4E-8	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	1.96E-19	7	57	No hit	No description
SMART	SM00526	7.1E-17	92	157	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	25.636	94	162	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	7.62E-17	94	174	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.8E-16	94	170	IPR011991	Winged helix-turn-helix DNA-binding domain
CDD	cd00073	6.69E-13	96	176	No hit	No description
Pfam	PF00538	2.3E-12	96	155	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MGNQKLKWTQ EEEEALIAGI EKYGAGKWKN ILVDPQFAPL LTSRSNIDLK DKWRNMNVSN 60 GTQSSRAPKL KAAAAPSSDI VIDDSSQNDQ DVKNPPRYNA MVFEALSTLK DTNGSDLNAI 120 ANFIEQKHQV PQNFRRALSS RLRTLVNQGK LEKVQNCYKL KKEASMETKP PSPKQKDVKP 180 QRQSSVSNDV LKEAADTAAY RVADAEHKSY LADEAVKETE RLSCLAEQND AMLLLAQKLY 240 EQCLRGETIN WT

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00231	DAP	Transfer from AT1G72740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004510409.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510409.1	0.0	telomere repeat-binding factor 4-like
Refseq	XP_004510410.1	0.0	telomere repeat-binding factor 4-like
Swissprot	F4IEY4	1e-72	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	A0A1S2YV38	0.0	A0A1S2YV38_CICAR; telomere repeat-binding factor 4-like
STRING	XP_004510409.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3228	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	2e-69	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]