PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510443.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 644aa    MW: 71208.1 Da    PI: 7.839
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510443.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.5e-08530578348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
   XP_004510443.1 530 AWTLVEVMKLVEGVSRCGPGRWSEIKRLSFssySYRTSVDLKDKWRNLL 578
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.791523582IPR017930Myb domain
SuperFamilySSF466892.61E-15525587IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-12525585IPR009057Homeodomain-like
SMARTSM007171.7E-8527580IPR001005SANT/Myb domain
CDDcd116602.91E-19529579No hitNo description
PfamPF002491.2E-5530578IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
METVVGIEDN DDGKLEDSVV DRSSSAALSS SPKKISNPVV YKLVRVEGDG RLVPATDDEV  60
MEVEDFLEYE NSEMRVVADT GQSLECISIE RSSSGKLRLE CSEGVSQLGT AEADLGKLNA  120
KFQMLQKVKQ EERLRLSSRS PVHSHVKIDS QCSADKFPVV NEKVRSETPY QEAPSIASSL  180
NYSHSNQSGS IDQCSRPSEG VIESGSSASD VYSTSKHNFS MPEGEICLDK LSIKELHELF  240
KVTFGRETTV KDKQWLKRRI AMSLTNSCDV SATTFTVKDN KITRKCEEEC SGNASAAAVI  300
SVKNMAGEGC GIEDNQVASE TRLKNLNVEN ELRDEDQQRE ERAAKRIRKP TKRYIEELSE  360
NESREHIPRS SSSNKNIGHG HVSPTAYVEP ARSAFPEARM FITRFDSLGG SDVQIPCVSR  420
VRRSRPRKNI KSLMKFLPTG VGEAAKLSNG SDADSEIQDK VSKPCSMPVK MHLLSTTESV  480
KEKQCLVIGT TEPRQELRPK RIDPSSNTSE GDIVTVPTAK GGMRRKHHRA WTLVEVMKLV  540
EGVSRCGPGR WSEIKRLSFS SYSYRTSVDL KDKWRNLLKA SFAQTPADEG MNSRKHGTAP  600
IPEPILVRVR ELAEMNSQAP QNFSSSKLTA SGPGSVHGDR LGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421427RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510443.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510443.10.0uncharacterized protein LOC101500283 isoform X2
TrEMBLA0A1S2YV580.0A0A1S2YV58_CICAR; uncharacterized protein LOC101500283 isoform X2
STRINGXP_004510442.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-104TRF-like 6