PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510444.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 643aa    MW: 71257.1 Da    PI: 7.6679
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.5e-08529577348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
   XP_004510444.1 529 AWTLVEVMKLVEGVSRCGPGRWSEIKRLSFssySYRTSVDLKDKWRNLL 577
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.791522581IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-12524584IPR009057Homeodomain-like
SuperFamilySSF466892.61E-15524586IPR009057Homeodomain-like
SMARTSM007171.7E-8526579IPR001005SANT/Myb domain
CDDcd116603.17E-19528578No hitNo description
PfamPF002491.2E-5529577IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
METVVGIEDN DDGKLEDSVV DRSSSAALSS SPKKISNPVV YKLVRVEGDG RLVPATDDEV  60
MEVEDFLEYE NSEMRVVADT GQSLECISIE RSSSGKLRLE CSEGTAEADL GKLNAKFQYI  120
EQMLQKVKQE ERLRLSSRSP VHSHVKIDSQ CSADKFPVVN EKVRSETPYQ EAPSIASSLN  180
YSHSNQSGSI DQCSRPSEGV IESGSSASDV YSTSKHNFSM PEGEICLDKL SIKELHELFK  240
VTFGRETTVK DKQWLKRRIA MSLTNSCDVS ATTFTVKDNK ITRKCEEECS GNASAAAVIS  300
VKNMAGEGCG IEDNQVASET RLKNLNVENE LRDEDQQREE RAAKRIRKPT KRYIEELSEN  360
ESREHIPRSS SSNKNIGHGH VSPTAYVEPA RSAFPEARMF ITRFDSLGGS DVQIPCVSRV  420
RRSRPRKNIK SLMKFLPTGV GEAAKLSNGS DADSEIQDKV SKPCSMPVKM HLLSTTESVK  480
EKQCLVIGTT EPRQELRPKR IDPSSNTSEG DIVTVPTAKG GMRRKHHRAW TLVEVMKLVE  540
GVSRCGPGRW SEIKRLSFSS YSYRTSVDLK DKWRNLLKAS FAQTPADEGM NSRKHGTAPI  600
PEPILVRVRE LAEMNSQAPQ NFSSSKLTAS GPGSVHGDRL GYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420426RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510444.10.0uncharacterized protein LOC101500283 isoform X3
TrEMBLA0A1S2YV680.0A0A1S2YV68_CICAR; uncharacterized protein LOC101500283 isoform X3
STRINGXP_004510442.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-106TRF-like 6