PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510445.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 640aa    MW: 71027.9 Da    PI: 7.6679
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510445.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.5e-08526574348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
   XP_004510445.1 526 AWTLVEVMKLVEGVSRCGPGRWSEIKRLSFssySYRTSVDLKDKWRNLL 574
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.791519578IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-12521581IPR009057Homeodomain-like
SuperFamilySSF466892.61E-15521583IPR009057Homeodomain-like
SMARTSM007171.7E-8523576IPR001005SANT/Myb domain
CDDcd116603.33E-19525575No hitNo description
PfamPF002491.2E-5526574IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
METVVGIEDN DDGKLEDSVV DRSSSAALSS SPKKISNPVV YKLVRVEGDG RLVPATDDEV  60
MEVEDFLEYE NSEMRVVADT GQSLECISIE RSSSGKLRLE CSEEADLGKL NAKFQYIEQM  120
LQKVKQEERL RLSSRSPVHS HVKIDSQCSA DKFPVVNEKV RSETPYQEAP SIASSLNYSH  180
SNQSGSIDQC SRPSEGVIES GSSASDVYST SKHNFSMPEG EICLDKLSIK ELHELFKVTF  240
GRETTVKDKQ WLKRRIAMSL TNSCDVSATT FTVKDNKITR KCEEECSGNA SAAAVISVKN  300
MAGEGCGIED NQVASETRLK NLNVENELRD EDQQREERAA KRIRKPTKRY IEELSENESR  360
EHIPRSSSSN KNIGHGHVSP TAYVEPARSA FPEARMFITR FDSLGGSDVQ IPCVSRVRRS  420
RPRKNIKSLM KFLPTGVGEA AKLSNGSDAD SEIQDKVSKP CSMPVKMHLL STTESVKEKQ  480
CLVIGTTEPR QELRPKRIDP SSNTSEGDIV TVPTAKGGMR RKHHRAWTLV EVMKLVEGVS  540
RCGPGRWSEI KRLSFSSYSY RTSVDLKDKW RNLLKASFAQ TPADEGMNSR KHGTAPIPEP  600
ILVRVRELAE MNSQAPQNFS SSKLTASGPG SVHGDRLGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417423RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510445.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510445.10.0uncharacterized protein LOC101500283 isoform X4
TrEMBLA0A1S2YV690.0A0A1S2YV69_CICAR; uncharacterized protein LOC101500283 isoform X4
STRINGXP_004510442.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-107TRF-like 6