PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510446.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 639aa    MW: 70723.5 Da    PI: 7.839
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.5e-08525573348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
   XP_004510446.1 525 AWTLVEVMKLVEGVSRCGPGRWSEIKRLSFssySYRTSVDLKDKWRNLL 573
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.791518577IPR017930Myb domain
SuperFamilySSF466892.61E-15520582IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-12520580IPR009057Homeodomain-like
SMARTSM007171.7E-8522575IPR001005SANT/Myb domain
CDDcd116603.25E-19524574No hitNo description
PfamPF002491.2E-5525573IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
METVVGIEDN DDGKLEDSVV DRSSSAALSS SPKKISNPVV YKLVRVEGDG RLVPATDDEV  60
MEVEDFLEYE NSEMRVVADT GQSLECISIE RSSSGKLRLE CSEGTAEADL GKLNAKFQML  120
QKVKQEERLR LSSRSPVHSH VKIDSQCSAD KFPVVNEKVR SETPYQEAPS IASSLNYSHS  180
NQSGSIDQCS RPSEGVIESG SSASDVYSTS KHNFSMPEGE ICLDKLSIKE LHELFKVTFG  240
RETTVKDKQW LKRRIAMSLT NSCDVSATTF TVKDNKITRK CEEECSGNAS AAAVISVKNM  300
AGEGCGIEDN QVASETRLKN LNVENELRDE DQQREERAAK RIRKPTKRYI EELSENESRE  360
HIPRSSSSNK NIGHGHVSPT AYVEPARSAF PEARMFITRF DSLGGSDVQI PCVSRVRRSR  420
PRKNIKSLMK FLPTGVGEAA KLSNGSDADS EIQDKVSKPC SMPVKMHLLS TTESVKEKQC  480
LVIGTTEPRQ ELRPKRIDPS SNTSEGDIVT VPTAKGGMRR KHHRAWTLVE VMKLVEGVSR  540
CGPGRWSEIK RLSFSSYSYR TSVDLKDKWR NLLKASFAQT PADEGMNSRK HGTAPIPEPI  600
LVRVRELAEM NSQAPQNFSS SKLTASGPGS VHGDRLGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416422RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510446.10.0uncharacterized protein LOC101500283 isoform X5
TrEMBLA0A1S2YV840.0A0A1S2YV84_CICAR; uncharacterized protein LOC101500283 isoform X5
STRINGXP_004510442.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-104TRF-like 6