PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510447.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 636aa    MW: 70494.3 Da    PI: 7.839
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.4e-08522570348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
   XP_004510447.1 522 AWTLVEVMKLVEGVSRCGPGRWSEIKRLSFssySYRTSVDLKDKWRNLL 570
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.791515574IPR017930Myb domain
SuperFamilySSF466892.61E-15517579IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-12517577IPR009057Homeodomain-like
SMARTSM007171.7E-8519572IPR001005SANT/Myb domain
CDDcd116603.38E-19521571No hitNo description
PfamPF002491.2E-5522570IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
METVVGIEDN DDGKLEDSVV DRSSSAALSS SPKKISNPVV YKLVRVEGDG RLVPATDDEV  60
MEVEDFLEYE NSEMRVVADT GQSLECISIE RSSSGKLRLE CSEEADLGKL NAKFQMLQKV  120
KQEERLRLSS RSPVHSHVKI DSQCSADKFP VVNEKVRSET PYQEAPSIAS SLNYSHSNQS  180
GSIDQCSRPS EGVIESGSSA SDVYSTSKHN FSMPEGEICL DKLSIKELHE LFKVTFGRET  240
TVKDKQWLKR RIAMSLTNSC DVSATTFTVK DNKITRKCEE ECSGNASAAA VISVKNMAGE  300
GCGIEDNQVA SETRLKNLNV ENELRDEDQQ REERAAKRIR KPTKRYIEEL SENESREHIP  360
RSSSSNKNIG HGHVSPTAYV EPARSAFPEA RMFITRFDSL GGSDVQIPCV SRVRRSRPRK  420
NIKSLMKFLP TGVGEAAKLS NGSDADSEIQ DKVSKPCSMP VKMHLLSTTE SVKEKQCLVI  480
GTTEPRQELR PKRIDPSSNT SEGDIVTVPT AKGGMRRKHH RAWTLVEVMK LVEGVSRCGP  540
GRWSEIKRLS FSSYSYRTSV DLKDKWRNLL KASFAQTPAD EGMNSRKHGT APIPEPILVR  600
VRELAEMNSQ APQNFSSSKL TASGPGSVHG DRLGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413419RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510447.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510447.10.0uncharacterized protein LOC101500283 isoform X6
TrEMBLA0A1S2YV940.0A0A1S2YV94_CICAR; uncharacterized protein LOC101500283 isoform X6
STRINGXP_004510442.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-104TRF-like 6