PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510582.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 190aa    MW: 22199.4 Da    PI: 9.3642
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.34.6e-142066147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k+ie   + qv+fskR+  ++ K  ELS++C+a+ a+ii s++ kly
  XP_004510582.1 20 KKIEQLNKLQVSFSKRKLRLFNKVTELSIMCQAKTAMIITSPNEKLY 66
                    578888899*************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-151271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.6751272IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-171382IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-111434IPR002100Transcription factor, MADS-box
PfamPF003192.1E-142166IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-113449IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-114970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVSSNGNSTT TKPKRKIDIK KIEQLNKLQV SFSKRKLRLF NKVTELSIMC QAKTAMIITS  60
PNEKLYACGY PNSDSVINQF IASENNVVID NEKKKQDEEI FETLRFQYEE LQEKLKEEKN  120
ILLKERNKGD ACFTSWWNHS IDDMSFESLE KFKNSLENLK LNIVTALEEK RVNSIYSTQP  180
HQERIKLLKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510582.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510582.11e-136agamous-like MADS-box protein AGL62
TrEMBLA0A1S2YVK01e-135A0A1S2YVK0_CICAR; agamous-like MADS-box protein AGL62
STRINGXP_004510582.11e-135(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-20AGAMOUS-like 62