PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510630.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 280aa    MW: 32605.2 Da    PI: 5.1691
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1873124556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +f++eq++ Le++Fe +  +  +++ +LA++lgL  rqV +WFqN+Ra++k
  XP_004510630.1  73 KRFSDEQIKSLESMFETETRLEPRKKLQLARELGLHPRQVAIWFQNKRARWK 124
                     68*************************************************9 PP
2HD-ZIP_I/II113.61.2e-3672162393
     HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      +r+s+eq+k+LE++Fe+e++Lep++K +lareLgl+prqva+WFqn+RAR+k+kqlE++y++L+++y++l+++ e+++ke ++L  +l++
  XP_004510630.1  72 TKRFSDEQIKSLESMFETETRLEPRKKLQLARELGLHPRQVAIWFQNKRARWKSKQLEREYNKLQTSYNNLASRFESMKKERQTLLIQLQK 162
                     69***********************************************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-1947128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-1955126IPR009057Homeodomain-like
SMARTSM003893.7E-1666130IPR001356Homeobox domain
PROSITE profilePS5007117.6766126IPR001356Homeobox domain
PfamPF000466.1E-1673124IPR001356Homeobox domain
CDDcd000866.38E-1475127No hitNo description
PRINTSPR000311.9E-597106IPR000047Helix-turn-helix motif
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PRINTSPR000311.9E-5106122IPR000047Helix-turn-helix motif
PfamPF021833.4E-13126166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MFLDIKVGID EFNLIDAYIS QDRKIIKVSK FLNPSKKMFE TLEYNSQYTY SSEAGEASPP  60
SSSMRKKKNK NTKRFSDEQI KSLESMFETE TRLEPRKKLQ LARELGLHPR QVAIWFQNKR  120
ARWKSKQLER EYNKLQTSYN NLASRFESMK KERQTLLIQL QKLNDLINKP IEQSHSSSQV  180
KGENSMESES ENGNNIKCET DVKQNHSMER SEHDVLGPLS DDDDTSIKVE YFGLEDEPGL  240
LNFAEHADGS LTSPEDWSAF ESNDLLGQSS SDYQWWDFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510630.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5086490.0JX508649.1 Medicago sativa homeobox-leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352145.10.0homeobox-leucine zipper protein HDZ12
SwissprotP468971e-65ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A3Q7K7H90.0A0A3Q7K7H9_CICAR; homeobox-leucine zipper protein HDZ12
STRINGXP_004510630.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-62homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]