PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510942.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 230aa    MW: 24204.2 Da    PI: 8.1475
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.81.2e-40241241100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_004510942.1  24 PCGACKFLRRKCLSGCIFAPYFDSEQgASHFAAVHKVFGASNVSKLLQNVPVHKRLDAVITICYEAQARMRDPVYGCVAHIFTLQQQVVSLQAEL 118
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+ +
  XP_004510942.1 119 SYLQGH 124
                     *99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.17823125IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-4024122IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSINSSCSGS GGGCGGGNSG ACGPCGACKF LRRKCLSGCI FAPYFDSEQG ASHFAAVHKV  60
FGASNVSKLL QNVPVHKRLD AVITICYEAQ ARMRDPVYGC VAHIFTLQQQ VVSLQAELSY  120
LQGHIATYEV PQPPKTSPPQ ATIAPSMVSL ANLPLASSSS INPATYDLSS LFDPMAQTSS  180
WAMHQRPNGQ YFGSGTSTSN NSGGDLQSLA RELLLRYGSS NDPSSNSLSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-39201287114LOB family transfactor Ramosa2.1
5ly0_B3e-39201287114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510942.11e-170LOB domain-containing protein 30-like
SwissprotO813234e-76LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A1S2YWA91e-168A0A1S2YWA9_CICAR; LOB domain-containing protein 30-like
STRINGXP_004510942.11e-169(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.15e-66LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]