PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510943.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 216aa    MW: 23715.8 Da    PI: 8.0802
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.42.8e-39161161100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+C++apyf ++q + +fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar rdP yG+vg+i++lqqq+++l+ael
  XP_004510943.1  16 PCGACKFLRRKCVKGCIFAPYFDSDQgTVHFAAVHKVFGASNASKLLMRIPSHKRLDAVVTLCYEALARSRDPLYGCVGHIFALQQQVMSLQAEL 110
                     7***********************9988******************************************************************* PP

          DUF260  95 allkee 100
                      +++++
  XP_004510943.1 111 TYVQHS 116
                     **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.00815117IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-3816114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDYCGGKIGG NERSGPCGAC KFLRRKCVKG CIFAPYFDSD QGTVHFAAVH KVFGASNASK  60
LLMRIPSHKR LDAVVTLCYE ALARSRDPLY GCVGHIFALQ QQVMSLQAEL TYVQHSLATM  120
QRLPISVAPS LPNPQSSSPS LHSSSSHQLG TNADLQSASN MSMHFDPFQQ LSTSLDSSSF  180
FNQSDQQPQD EELQALAREF VSRYLPGVRF QPSNSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-361511010104LOB family transfactor Ramosa2.1
5ly0_B7e-361511010104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510943.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0525560.0BT052556.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-F-13 unknown mRNA.
GenBankBT1490770.0BT149077.1 Medicago truncatula clone JCVI-FLMt-11C11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510943.11e-160LOB domain-containing protein 19-like
SwissprotO813221e-70LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1S2YWB01e-158A0A1S2YWB0_CICAR; LOB domain-containing protein 19-like
STRINGXP_004510943.11e-159(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.18e-62LOB domain-containing protein 31