PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511340.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 729aa    MW: 80693.3 Da    PI: 6.0302
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1853108156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +r+ +++t++q++e+e +F+ +++p+ ++r+eL  +lgL+  qVk+WFqN+R++ k
  XP_004511340.1  53 KRSYRRHTQHQIQEMEVFFKHCPHPDDKQRKELGLQLGLEPLQVKFWFQNKRTQLK 108
                     688899**********************************************9876 PP
2START176.91.2e-552494688206
                     HHHHHHHHHC.-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
           START   8 qelvkkalae.epgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                     +el k+ala+  ++W        e++n+de+++ f+++ +      +++ +r+s+vv+m++ +l  +l+d++ +W+ ++     +a tl+v+s+g
  XP_004511340.1 249 DELTKLALANgNNLWLPNNnlntEILNEDEYVRHFPRATApkplgLRTDGSRESVVVIMNHINLIDILMDVN-RWSSMFSgvvsRAVTLKVLSTG 342
                     566666665415678877788889***********99988********************************.********************** PP

                     ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
           START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                           galq+m+ae+q++sp vp R+ +fvRy++ + +g+w++vdvS+ds ++  + ss   R +++pSg+ i++++ng+skvtw+ehv+++++
  XP_004511340.1 343 vagnynGALQVMSAEFQVPSPFVPsRENYFVRYCKLHVDGVWAVVDVSLDSLRPAASgSSTASRTQRRPSGCFIQELPNGYSKVTWIEHVEVDDK 437
                     *******************************************************999************************************* PP

                     XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                     ++++++++lv sgla gak+wva lqrqce+
  XP_004511340.1 438 MVQNIYKPLVDSGLAYGAKRWVAILQRQCER 468
                     *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2036108IPR009057Homeodomain-like
SuperFamilySSF466896.27E-1837109IPR009057Homeodomain-like
PROSITE profilePS5007115.69450110IPR001356Homeobox domain
SMARTSM003892.3E-1752114IPR001356Homeobox domain
PfamPF000463.1E-1653108IPR001356Homeobox domain
CDDcd000865.12E-1753111No hitNo description
PROSITE profilePS5084833.817233471IPR002913START domain
SuperFamilySSF559612.42E-31235469No hitNo description
CDDcd088756.53E-103237467No hitNo description
SMARTSM002345.7E-52242468IPR002913START domain
PfamPF018529.5E-47251468IPR002913START domain
Gene3DG3DSA:3.30.530.202.4E-7343467IPR023393START-like domain
SuperFamilySSF559616.11E-22490694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MYGSQNHKRM LEMFEKELGR DRDDGFEIEP DVPSGDDNDN DNDEQQSNQP PKKRSYRRHT  60
QHQIQEMEVF FKHCPHPDDK QRKELGLQLG LEPLQVKFWF QNKRTQLKVQ SEREENEFLK  120
AEIEKLRSEM NRYKEAISNT TCHLCGTPAT VGEMSYEEQQ LRLENALLRK EIERLAEDAT  180
ESHTNISSTQ TSNQLVVSRS VDVGNGKYNI NNGMVGEAYG GNGELVRSIQ LQGVEDKRKI  240
VELAVLGMDE LTKLALANGN NLWLPNNNLN TEILNEDEYV RHFPRATAPK PLGLRTDGSR  300
ESVVVIMNHI NLIDILMDVN RWSSMFSGVV SRAVTLKVLS TGVAGNYNGA LQVMSAEFQV  360
PSPFVPSREN YFVRYCKLHV DGVWAVVDVS LDSLRPAASG SSTASRTQRR PSGCFIQELP  420
NGYSKVTWIE HVEVDDKMVQ NIYKPLVDSG LAYGAKRWVA ILQRQCERLA CSMSSNMPTG  480
NLGVIMSVEG RKSMLNLAER MVTSFSTSIG DSTIHAWTSL PSNGPEDIRV MTKKYNDEPG  540
SGRPTGVVLS TVTSFWLPVP PKRLFDFLRN QNSRSQWDIL SSGGIVQEMA HIANGHDPGN  600
CVSLLRVNSP NIGQSNMLIL QESSTDITGS YVIYAPVDMA AMNVVLNGGD SNCVALLPSG  660
FAIVPDGSGP NGGPIPDLLS GGSLLTVAFH ILVDSVTNAR LALGSVTTVN TLIKSTVERI  720
KVAVIPNIT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511340.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A1S2YX400.0A0A1S2YX40_CICAR; homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
STRINGXP_004511340.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]