PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511604.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 227aa    MW: 25506.2 Da    PI: 4.8333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-1868119155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +++Wv+e r+p++n  + r++lg++ t+e+Aa+a++ a++ l+g
  XP_004511604.1  68 PVYRGVRARD-NNKWVCEMRVPNNN--KSRIWLGTYPTPEMAARAHDVAALTLRG 119
                     68*****999.8*********9766..5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-1368119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2969129IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2169129IPR016177DNA-binding domain
PROSITE profilePS5103221.24669127IPR001471AP2/ERF domain
SMARTSM003804.2E-2669133IPR001471AP2/ERF domain
CDDcd000187.14E-2670129No hitNo description
PRINTSPR003677.9E-77081IPR001471AP2/ERF domain
PRINTSPR003677.9E-793109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDDIFMSSLN YATQQHLNIS SSSSSSSSTS ETTSYSTNRT TSNEEVILAS TRPKKRAGRK  60
VFKETRHPVY RGVRARDNNK WVCEMRVPNN NKSRIWLGTY PTPEMAARAH DVAALTLRGQ  120
SACLNFADSA WRLRLPETTD AVEIRRAAME AAQLFAVEDS QCEQQSVGEE QVVPVVTSEY  180
DEEMNDLILS IANEPLRSPP PSMTDYYGGN DNVDMYDTQV SLWNFST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00002PBMTransfer from 475045Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511604.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511604.11e-170dehydration-responsive element-binding protein 1E-like
SwissprotQ9SGJ64e-56DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLA0A1S2YXP81e-169A0A1S2YXP8_CICAR; dehydration-responsive element-binding protein 1E-like
STRINGXP_004511604.11e-170(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.26e-58ERF family protein