PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004511662.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 337aa MW: 39540.3 Da PI: 6.6674

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004511662.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.2	2.2e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kk+++k+++l ++ik+vd+yk+ePwdL++ k+ ++e+ ewyfFs++dkky+t++r+nratk+g+Wkatg+dk++ XP_004511662.1 7 VPPGFRFHPTDEELVDHYLRKKIASKRIDL-DIIKDVDLYKIEPWDLQElcKIGSDEQsEWYFFSHKDKKYPTSSRTNRATKAGFWKATGRDKAI 100 69**************************.99**********954555554445******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + k+ l+g++ktLvfykgrap+g+k+dW+mheyrle XP_004511662.1 101 YL-KHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 .899*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-60	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	58.072	7	156	IPR003441	NAC domain
Pfam	PF02365	6.8E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MNNFSHVPPG FRFHPTDEEL VDHYLRKKIA SKRIDLDIIK DVDLYKIEPW DLQELCKIGS 60 DEQSEWYFFS HKDKKYPTSS RTNRATKAGF WKATGRDKAI YLKHCLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNQN GTTQEEGWAV CKVFKKRIVT TMRKMEDSPC WYDDQVSLIQ 180 ELESPNRVSH PYYASYQQNY PCKQELDQLQ YINILNDANF LQLPQLESPK VPFQCSSSHN 240 SLIQEQHIQA QQQHCQQQNM QLFSGRNDVQ DWRLLDKFVA SQLSRDIQDA SKETSSYCNV 300 DEQIANLLEN DESKKSETGQ EYATSTSNSS CQIDMWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-51	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004511662.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR962129	1e-98	CR962129.2 Medicago truncatula chromosome 5 clone mth2-28m4, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004511662.1	0.0	NAC domain-containing protein 7
Refseq	XP_012574502.1	0.0	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-138	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A1S3EF91	0.0	A0A1S3EF91_CICAR; NAC domain-containing protein 7
STRING	XP_004511662.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-135	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]