PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511768.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARR-B
Protein Properties Length: 547aa    MW: 61190.3 Da    PI: 7.1937
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511768.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.7e-28306360156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  XP_004511768.1 306 KMKVDWTPELHKKFVKAVEQL-GIDQAIPSRILELMKVDGLTRHNVASHLQKYRMH 360
                     5689*****************.********************************96 PP
2Response_reg23.62.5e-09201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealka 92 
                     vl+ + + + ++ ++  le  +y +v ++ +  eal  +  +   +++ ++ ++ +    G+++l++   + ++lp i+ + ++  +++ +++ +
  XP_004511768.1  20 VLLLEGDTNSASEIAAKLEAMDY-IVSTFCNENEALSAISSSPkgFHVAVVEVSTSCpDGGFKFLEN---A-KDLPTIMTSNSQCLNTTMKCIAL 109
                     56677777778888999999***.***************888778***********96667777654...3.4799999999999********** PP

                     TESEEEESS--HHHHHH CS
    Response_reg  93 GakdflsKpfdpeelvk 109
                     Ga +fl+Kp ++++l +
  XP_004511768.1 110 GAVEFLTKPLSEDKLKN 126
                     *************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.11E-1316135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.9E-1516155No hitNo description
PROSITE profilePS5011020.49719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.8E-620126IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.10E-821131No hitNo description
PROSITE profilePS5129415.88303362IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-27304363IPR009057Homeodomain-like
SuperFamilySSF466891.08E-18304363IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-25306361IPR006447Myb domain, plants
PfamPF002494.7E-8309358IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MVCTANDLQG WKDFPKGLRV LLLEGDTNSA SEIAAKLEAM DYIVSTFCNE NEALSAISSS  60
PKGFHVAVVE VSTSCPDGGF KFLENAKDLP TIMTSNSQCL NTTMKCIALG AVEFLTKPLS  120
EDKLKNIWQH VVHKAFNAEA SALSESLKPV KESVESMLQL RTNNKLHENI ISIDLEKVSK  180
FSDNEHEQSP ASDKYPAPST PQLKQGARLV DDGDCHEQTT NCSIEKESVE HDGECKSVET  240
SCENLNVESS PQSRKLEETL TKEEEGFAND SKGVSLNPQN KKFGNTSSIK SGALNDSCEN  300
KATRKKMKVD WTPELHKKFV KAVEQLGIDQ AIPSRILELM KVDGLTRHNV ASHLQKYRMH  360
KRQMMHGEED RKWPNQRDQI HRNYSLQRPI MAYPPYHHSN HTLPPAPIYP MWGQPGSQTT  420
GVQIWSPPPG YPLWQSTESW HWKPYPPGVH VDAWGSPMLP PPQPPYSPYT QSITGLHNAK  480
AADYRFGMPR SSFEHHPAEE VVDKVVKEAI SKPWLPLPLG LKPPSMDSVM SELSKQGIPC  540
RKGSKRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-16311360655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511768.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445161e-107AC144516.5 Medicago truncatula clone mth2-28p22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511768.10.0two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA431e-138APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1S2YY330.0A0A1S2YY33_CICAR; two-component response regulator-like APRR2 isoform X2
STRINGXP_004511768.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-128ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]