PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004511827.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 292aa MW: 31783.9 Da PI: 10.3206

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004511827.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.2	1.2e-10	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ XP_004511827.1 5 KQKWTAEEEAALKAGVVKYGAGKWRTILTDPEfstilRMRSNVDLKDKWRN 55 79*********************************9*********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.823	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.85E-15	2	66	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-5	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	6.4E-7	5	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-12	5	56	IPR009057	Homeodomain-like
CDD	cd11660	1.08E-17	6	57	No hit	No description
SMART	SM00526	1.6E-11	114	179	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	8.16E-15	115	193	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	22.768	116	184	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	8.5E-14	118	188	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	5.8E-9	121	177	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV VKYGAGKWRT ILTDPEFSTI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNLPPPK TENNHTTSNA IVQYNPEVAT AQPLAVSGGM SSSKEQISRL 120 DNLILESIVK LKEPKGSDMA AIAACIEDQY RSPPNLMKLL STKLKHMVAS GKLMKVKDKY 180 RIATNSTKTS EKRKCSSMLL LEGRPEDSPR AEKTNVNILS KSQIDVELLK MKGVTAQEVA 240 AAAAKAVAEA EAAIAEAEAA AREAEAAEAE AEAARVFAKA AMKALKCRRL NI

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004511827.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF468477	0.0	EF468477.1 Medicago truncatula MYB transcription factor MYB25 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004511827.1	0.0	telomere repeat-binding factor 2-like isoform X2
Swissprot	Q9FJW5	3e-74	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	A0A1S2YY82	0.0	A0A1S2YY82_CICAR; telomere repeat-binding factor 2-like isoform X2
STRING	XP_004511827.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1453	33	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-64	telomere repeat binding factor 1

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]