PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004511855.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 234aa MW: 25590 Da PI: 8.0864

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004511855.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.4	3.1e-30	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p+ +r+++++sl+ eA+ r+ +Pv+Gavg++++++++++q+ XP_004511855.1 2 SCNGCRVLRKGCSESCILRPCLqwidtPEAQGHATVFVAKFFGRADLMSFISNVPQPQRPALFQSLLLEACGRTVNPVNGAVGLLWTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelal 96 ++e++l XP_004511855.1 97 AVETVL 102 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.806	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPQPQR 60 PALFQSLLLE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTPRPI PEFLGLDALT 120 STADDASEGE VTCNDARKVQ DPNQNSRFVS SRSNKVASGG KRKRYDFATT DLNLRLTPCF 180 LQNALTSSCR REIRRPGTPS MNSEESVTTM TSLESGIGDQ YVNDGDRKVL NLFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004511855.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143032	1e-125	BT143032.1 Medicago truncatula clone JCVI-FLMt-1O21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004511855.1	1e-174	LOB domain-containing protein 37 isoform X1
Swissprot	Q9SN23	2e-80	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A1S2YYA3	1e-173	A0A1S2YYA3_CICAR; LOB domain-containing protein 37 isoform X1
STRING	XP_004511855.1	1e-173	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	7e-83	LOB domain-containing protein 38