PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004511936.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Trihelix

Protein Properties

Length: 246aa MW: 28834.7 Da PI: 9.819

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004511936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.8	3.3e-19	25	116	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 Wt+qe+ Li+a++e++ +l+rg l++ +Weev+ ++ ++s+ qC++k+e+l++r++ +k++ + ++ ss++++yf+ ++ XP_004511936.1 25 WTHQETINLITAYQEKWYSLKRGPLRGSQWEEVAVVVaarcgyDYNHPSKSALQCRHKMEKLRQRHRSEKHRLSATsSAASSRSWQYFRLMD 116 ***********************************8666654455589*******************9995688999****998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-17	24	118	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MASSSSSPPK PIVLSLTKKP QPIPWTHQET INLITAYQEK WYSLKRGPLR GSQWEEVAVV 60 VAARCGYDYN HPSKSALQCR HKMEKLRQRH RSEKHRLSAT SSAASSRSWQ YFRLMDDLER 120 GPLPISVRPI PHNHNIEDEE LDDDINCDRG KRSFRSRSIN NILNQKPEVT TRRERDDDDD 180 ERVTAKGLTA ELRDFAERII GLENMKMEMM KETERFRLEM ENKRMRLILE SQWRIVDSIG 240 RAFRSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004511936.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004511936.1	0.0	uncharacterized protein LOC101494968
TrEMBL	A0A1S2YYG8	0.0	A0A1S2YYG8_CICAR; uncharacterized protein LOC101494968
STRING	XP_004511936.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	4e-31	Trihelix family protein