PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004511995.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

TALE

Protein Properties

Length: 723aa MW: 80137.2 Da PI: 6.9653

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004511995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	531	568	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_004511995.1 531 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 568 664559******************************88 PP
2	BELL	118.6	2.9e-38	384	455	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eVd+rY+ y+eq+q+v++sF++++g g+a pYt+lA+ka+SrhFrcLkdai+ q+ XP_004511995.1 384 DRIEHQRRKVKLLSMLDEVDRRYNNYCEQMQMVVNSFDVMMGFGAAIPYTALAQKAMSRHFRCLKDAITAQV 455 589******************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.2E-65	315	453	IPR006563	POX domain
Pfam	PF07526	1.9E-49	320	452	IPR006563	POX domain
PROSITE profile	PS50071	12.568	509	572	IPR001356	Homeobox domain
CDD	cd00086	4.46E-12	512	573	No hit	No description
SMART	SM00389	1.2E-9	512	576	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.21E-17	514	579	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.5E-29	515	578	IPR009057	Homeodomain-like
Pfam	PF05920	3.6E-18	529	568	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
MGIATPPFPS SSSSSSSIIH HFKKTVTLLL HHNQISFNCS NSMSQDYHHH QGIFQFSNGF 60 ERSSSSSQQI QRDKVRGFQQ QELARPPVYE TAGMLSEMFN FPDDSSTAEL LENATFRSSS 120 SSSASRHQQQ QQQPQTSTIT GNSENNNNWY GNHTNNQQQQ QHQHQISSIN AAAADSAAAA 180 MHLFLMNPSH MHQTRSSSSP PTPHPQQTLH MFPNSGFGQF TWGGGTTQEG GGGVEGLSLS 240 LCSSLEVAKA DQELRSLYYN NNQVGEGGPS SSYQYKNHHN HHQALMNNLH LQQGGGTNNI 300 IIGYNNNYNQ HHQGLSSLNV VRNSKYMKAA QELFQEFCSV GGGRSNHQFI IKNNKLNSNP 360 NNGDHPSNSS SSKDTPLPPL SASDRIEHQR RKVKLLSMLD EVDRRYNNYC EQMQMVVNSF 420 DVMMGFGAAI PYTALAQKAM SRHFRCLKDA ITAQVKHSSE VLGEKEGGGG GGNSLGAGLT 480 KGETPRLKAL EQSLRQQRAF NQIGMNMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS 540 DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ ELNEAECGDK QISQENNNNN 600 NNSVGDQTPP QQPPTTPTTK ISEENDQAIQ SNSITAINTT VSEVAPPFDS DMSPQRSMAM 660 DDTCRYGSLV AEDYETASDI GSSTLIRFGS TSGDVSLTLG LRHAGNMPDN KTTTFSIRDF 720 GPI

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

MGIATPPFPS SSSSSSSIIH HFKKTVTLLL HHNQISFNCS NSMSQDYHHH QGIFQFSNGF  60
ERSSSSSQQI QRDKVRGFQQ QELARPPVYE TAGMLSEMFN FPDDSSTAEL LENATFRSSS  120
SSSASRHQQQ QQQPQTSTIT GNSENNNNWY GNHTNNQQQQ QHQHQISSIN AAAADSAAAA  180
MHLFLMNPSH MHQTRSSSSP PTPHPQQTLH MFPNSGFGQF TWGGGTTQEG GGGVEGLSLS  240
LCSSLEVAKA DQELRSLYYN NNQVGEGGPS SSYQYKNHHN HHQALMNNLH LQQGGGTNNI  300
IIGYNNNYNQ HHQGLSSLNV VRNSKYMKAA QELFQEFCSV GGGRSNHQFI IKNNKLNSNP  360
NNGDHPSNSS SSKDTPLPPL SASDRIEHQR RKVKLLSMLD EVDRRYNNYC EQMQMVVNSF  420
DVMMGFGAAI PYTALAQKAM SRHFRCLKDA ITAQVKHSSE VLGEKEGGGG GGNSLGAGLT  480
KGETPRLKAL EQSLRQQRAF NQIGMNMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS  540
DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ ELNEAECGDK QISQENNNNN  600
NNSVGDQTPP QQPPTTPTTK ISEENDQAIQ SNSITAINTT VSEVAPPFDS DMSPQRSMAM  660
DDTCRYGSLV AEDYETASDI GSSTLIRFGS TSGDVSLTLG LRHAGNMPDN KTTTFSIRDF  720
GPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	518	576	5	63	Homeobox protein Meis2
3k2a_B	2e-16	518	576	5	63	Homeobox protein Meis2
4xrm_A	2e-16	518	576	5	63	Homeobox protein Meis2
4xrm_B	2e-16	518	576	5	63	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004511995.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF406699	3e-76	AF406699.1 Solanum tuberosum BEL1-related homeotic protein 13 (Bel13) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004511995.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-144	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1S2YYM0	0.0	A0A1S2YYM0_CICAR; BEL1-like homeodomain protein 4
STRING	XP_004511995.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-127	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]