PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004512013.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HD-ZIP

Protein Properties

Length: 217aa MW: 25498.6 Da PI: 6.1693

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004512013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.1	8.6e-20	55	109	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_004512013.1 55 KKRKLSEEQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKN 109 56699************************************************95 PP
2	HD-ZIP_I/II	114.6	6e-37	54	145	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kkr+ls+eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+ ++ e++rLe+ev +Lre+l XP_004512013.1 54 NKKRKLSEEQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKINESTLLEKCRLETEVLKLREQLC 145 59***************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.491	50	110	IPR001356	Homeobox domain
SMART	SM00389	8.5E-18	53	114	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.61E-18	54	118	IPR009057	Homeodomain-like
CDD	cd00086	1.51E-15	55	111	No hit	No description
Pfam	PF00046	5.3E-17	55	109	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-20	57	117	IPR009057	Homeodomain-like
PRINTS	PR00031	2.4E-5	81	90	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	85	108	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.4E-5	90	106	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MNHGPTQDQM MLISQLFPSS AYTQIISQQG ENKKARRRRN KKSKGGENGG NEMNKKRKLS 60 EEQVNLLEQN FGNEHKLESE RKDRLAMELG LDPRQVAVWF QNRRARWKNK KLEEEYSNLK 120 KINESTLLEK CRLETEVLKL REQLCEAEKE IQRLREPIER VDPSNSSSTS SHESQSMEVV 180 DPPFLGEFGV DVYDDDVFYV PNETHYFNGM EWINLYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	57	RRRNKKSKGGENGGNEMNKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004512013.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004512013.1	1e-161	homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	2e-69	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A1S2YYP5	1e-159	A0A1S2YYP5_CICAR; homeobox-leucine zipper protein ATHB-40
STRING	XP_004512013.1	1e-160	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-53	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]